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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21060.1 | AT | Glyceraldehyde-3-phosphate dehydrogenase-like family protein | JGI | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009067 | GO-bp | aspartate family amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009082 | GO-bp | branched-chain amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009086 | GO-bp | methionine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009088 | GO-bp | threonine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009090 | GO-bp | homoserine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009097 | GO-bp | isoleucine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0004072 | GO-mf | aspartate kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004412 | GO-mf | homoserine dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| KOG0455 | KOG | Homoserine dehydrogenase | JGI | N/A | IEA |
| PTHR21499 | Panther | ASPARTATE KINASE | JGI | N/A | IEA |
| PTHR21499:SF8 | Panther | JGI | N/A | IEA | |
| PF00742 | PFAM | Homoserine dehydrogenase | JGI | N/A | IEA |
| HOMOSERSYN-PWY | SoyCyc9 | L-homoserine biosynthesis | Plant Metabolic Network | ISS | |
| PWY-3001 | SoyCyc9 | superpathway of L-isoleucine biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-724 | SoyCyc9 | superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | Plant Metabolic Network | ISS | |
| THRESYN-PWY | SoyCyc9 | superpathway of L-threonine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-48979 | SoyCyc9-rxn | homoserine dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.20g053200 not represented in the dataset |
Glyma.20g053200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g11950 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g053200.1 sequence-type=CDS polypeptide=Glyma.20g053200.1.p locus=Glyma.20g053200 ID=Glyma.20g053200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGAATATTCCTCTGATTCTAATGGGTTGTGGAGGAGTTGGTCGTCAACTTCTCCAACACATTGTCTCGTGTCGTTCTCTTCACTTTACACAGGGGCTGTGCTTGAGAGTTGTAGGAGTCGGTGATAGTAAATCTTTGGTGGTTACGGAGGATTTGCTGCATGAGGGGTTGAATGATGGCTTCTTGTTAGAACTTTGCCGGGTCAAGAGTGTCGGCGAATCTCTATTAAAACTTCTTGATTTTGGGAAATGCCAGGCATTTGTGCATCCGGAGTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAGGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAAAGCAAGCGATTGATATGGGTTGTTGTGCTGTTATGGCAAATAAGAAGCCTCTTACATCTACAATGGAGGATTTTAAAAAACTTTTCATCTATCCACGTCGTATTCGGCATGAGTCAACTGTAGGCGCTGGTCTTCCTGTGATAGCATCACTGAATCGCATAATCTCTTCTGGTGATCCCGTTCATCAAATTATTGGGAGTTTGAGCGGGACATTGGGTTATGTAATGAGTGAGGTTGAAGATGGAAAGCCATTGAGCCAAGTTGTTAGAGATGCTAAAAGTTTGGGGTATACTGAACCAGATCCACGTGATGACCTTGGTGGAATGGACGTCGCTAGAAAGGCTTTAATACTTGCTCGAATACTTGGCCATCAAATTAATCTGGATAGCATTCAGATTGAGAGCTTGTATCCCAAAGAAATGGGGCCTGGCGTAATGACTGTTGAAGACTTCTTGAACCGTGGACTCTTGTTGCTTGATAAAGATATTCAAGATAGAGTTGAGAAGGCAGCTTCAAATGGAAATGTGTTGCGCTATGTCTGTGTGATCATGGGTTCAAGGTGTGAAGTTGGTATTCAGGAGCTTCCAAAGAATTCTCCCTTGGGAAGACTAAGAGGAAGTGATAATGTGTTGGAAATATATACTCGATGCTATAGTAAACAACCACTGGTTATTCAAGGTGCTGGAGCTGGAAATGACACTACTGCTGCTGGGGTTCTTGCTGATATCGTAGATATTCAAGACTTATTTCCTTGA
>Glyma.20g053200.1.p sequence-type=predicted peptide transcript=Glyma.20g053200.1 locus=Glyma.20g053200 ID=Glyma.20g053200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKNIPLILMGCGGVGRQLLQHIVSCRSLHFTQGLCLRVVGVGDSKSLVVTEDLLHEGLNDGFLLELCRVKSVGESLLKLLDFGKCQAFVHPESQGKILEIAFQLGKKTGLVFVDCSASSDTVAVLKQAIDMGCCAVMANKKPLTSTMEDFKKLFIYPRRIRHESTVGAGLPVIASLNRIISSGDPVHQIIGSLSGTLGYVMSEVEDGKPLSQVVRDAKSLGYTEPDPRDDLGGMDVARKALILARILGHQINLDSIQIESLYPKEMGPGVMTVEDFLNRGLLLLDKDIQDRVEKAASNGNVLRYVCVIMGSRCEVGIQELPKNSPLGRLRGSDNVLEIYTRCYSKQPLVIQGAGAGNDTTAAGVLADIVDIQDLFP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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