SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g051200

Feature Type:gene_model
Chromosome:Gm20
Start:11359309
stop:11378386
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g051200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17410.2AT Spc97 / Spc98 family of spindle pole body (SBP) component JGI N/AIEA
GO:0000226GO-bp microtubule cytoskeleton organization EnsemblGenomesN/AIEA
GO:0000226GO-bp microtubule cytoskeleton organization JGI N/AIEA
GO:0007020GO-bp microtubule nucleation EnsemblGenomesN/AIEA
GO:0000922GO-cc spindle pole EnsemblGenomesN/AIEA
GO:0000922GO-cc spindle pole JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005815GO-cc microtubule organizing center EnsemblGenomesN/AIEA
GO:0005815GO-cc microtubule organizing center JGI N/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0043015GO-mf gamma-tubulin binding EnsemblGenomesN/AIEA
KOG2001 KOG Gamma-tubulin complex, DGRIP84/SPC97 component JGI N/AIEA
PTHR19302Panther GAMMA TUBULIN COMPLEX PROTEIN JGI N/AIEA
PTHR19302:SF13Panther GAMMA-TUBULIN COMPLEX COMPONENT 2 JGI N/AIEA
PF04130PFAM Spc97 / Spc98 family JGI N/AIEA

Expression Patterns of Glyma.20g051200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g051200 not represented in the dataset
Glyma.20g051200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g051200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g12263 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g051200
>Glyma.20g051200.1 sequence-type=CDS polypeptide=Glyma.20g051200.1.p locus=Glyma.20g051200 ID=Glyma.20g051200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCAAACTGCCATTGCCAACTTTGAAAAGGCAATAGGCTGTTACTCTCCATCGGTTCAGGAGCTTATTGTTATTGATGATGTGCTCTCCGCCATGGTTGGCATTGAAGGACGTTACATCTTAATCAAAACAATTTGTGGAAAGAGTGATGATATTACTTTCCTGGTTGATCCGTCAATGGATTTGGCCCTACAGGAGTTGGCAAAACGGATATTCCCTCTTTGCAAGAGCTTTCTGTTGATCAACCAGTTTGTGGAGTCAAGGTCTGAGTTCCAGAGTGGCCTGGTTAATCATGCCTTTTCTGCTGCACTAAGGGCACTTCTTCTCGATTACCAGGCTTTGGTGGCACAACTCGAACACCAATTTCGGCTTGGAAGGCTTTCCCTTCAAGGATTGTGGTTCTACTGTCAGAGCCAGGCAAAGGCTATGGCTGGAGACAATGCTGTCAGGATGATGCTGGAGAAAATGACACAATGTGCAAGTAGTGCTTACATGAGCATATTAGAAAGATGGGTTTACGAAGGTGTAATAGATGATCCTTATGGTGAATTTTTCATCGCAGAGGACAAATCTCTTCAAAAGGAGAGTCTCACTCAAGATTATGAAGCTAAGTATTGGCAACAACGTTACAGCCTCAAAGATGGAATTCCTAGTTTCCTTGCAAATATTGCAGGAGCAATTTTGACAACAGGAAAATATCTAAATGTCATGAGAGAATGTGGGCATACTGTTCGGGCCCCTCCATCAGAAAATTCAAAACTAATGAGTTTTGGCTCAAATCATCATTATCTTGAATGTATTAAGGCTGCTTATAACTTTGCAAGCAGTGAACTCTTGAATCTCATTATGGAAAAGTATGATCTTACAGGAAGGCTGCGTTCTATAAAACACTACCTTCTTCTTGATCAGGGTGATTTCTTAGTACATTTTATGGATATTGCACGAGATGAACTGGCTAAAAAGCCTGATGAAGTCTCAGTTGAGAAGCTGCAGTCTCTTCTAGACCTTGCATTGCGTACTACAGCAGCTGCAGCAGATCCTTTTCATGAAGGCTTAACCTGTGTTGTGGAAAGATCTTCTCTGATTAGAAGGTTGGGCACATTTAATGATCTTGAAGTTACTCAGAGAAATTCTGGCAACAATGTTCTGGAGGAGCCTGTTAGCATCACTGGCCTCGAAACATTTTCACTTAGTTACAAGGTTCACTGGCCACTGTCTATAGTGTTATCACGTAAAGCCCTTACAAAGTACCAATTACTTTTTCGATTTCTTTTCCATTGTAAACATGTTGACCGTCAGTTATGTGGAGCTTGGCAAGTGCATCAAGGAGTTCGTGCTCTCAATACACGTGAAACTGCTATATCCAGATCATCTCTCCTTTGCCGGAGCATGCTTAAATTTATTAATAGCCTTTTGCACTATCTGACATTTGAGGTTATTGAACCCAATTGGCATCTGATGTATAACAGACTTCAGTCGGCAAATAGCATAGATGAGGTTATACAACAACATGATTTTTTCCTTGATAAATGTTTGAGAGAGTGTTTACTTCTTTTACCTGAGCTGCTGAAGAAGGTGGAGAGGCTTAAATCCATGTGCCTACAATATGCAGCAGCAACTCAATGGCTTATTTCTTCTTCTATTGAATTACATAACCCAGAAGAACCTATTGATGAATCAATTGGCTTGAATAAAGCCAAAGGGAAATCAGGTCAGGTCCTGAAGTCAACCACCAGAAATGTGGCAGTCACTGATTCTGTTCTCAAATTTGAGAAAGAGTTTAATACCGAGCTTCAGAGTCTTGGATCAATCTTGAGTAGTAACTCCCAGGCAGAGCCATATCTGTCTCATCTAGCACAATGGCTTCTTGGTGTTAAAAATGAAAAAAATGGTTTATGA
Predicted protein sequences of Glyma.20g051200
>Glyma.20g051200.1.p sequence-type=predicted peptide transcript=Glyma.20g051200.1 locus=Glyma.20g051200 ID=Glyma.20g051200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQTAIANFEKAIGCYSPSVQELIVIDDVLSAMVGIEGRYILIKTICGKSDDITFLVDPSMDLALQELAKRIFPLCKSFLLINQFVESRSEFQSGLVNHAFSAALRALLLDYQALVAQLEHQFRLGRLSLQGLWFYCQSQAKAMAGDNAVRMMLEKMTQCASSAYMSILERWVYEGVIDDPYGEFFIAEDKSLQKESLTQDYEAKYWQQRYSLKDGIPSFLANIAGAILTTGKYLNVMRECGHTVRAPPSENSKLMSFGSNHHYLECIKAAYNFASSELLNLIMEKYDLTGRLRSIKHYLLLDQGDFLVHFMDIARDELAKKPDEVSVEKLQSLLDLALRTTAAAADPFHEGLTCVVERSSLIRRLGTFNDLEVTQRNSGNNVLEEPVSITGLETFSLSYKVHWPLSIVLSRKALTKYQLLFRFLFHCKHVDRQLCGAWQVHQGVRALNTRETAISRSSLLCRSMLKFINSLLHYLTFEVIEPNWHLMYNRLQSANSIDEVIQQHDFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIELHNPEEPIDESIGLNKAKGKSGQVLKSTTRNVAVTDSVLKFEKEFNTELQSLGSILSSNSQAEPYLSHLAQWLLGVKNEKNGL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo