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Report for Sequence Feature Glyma.20g050800

Feature Type:gene_model
Chromosome:Gm20
Start:11061105
stop:11067520
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g050800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23310.1AT Fe superoxide dismutase 3 JGI N/AIEA
GO:0006801GO-bp superoxide metabolic process EnsemblGenomesN/AIEA
GO:0006801GO-bp superoxide metabolic process JGI N/AIEA
GO:0019430GO-bp removal of superoxide radicals EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004784GO-mf superoxide dismutase activity EnsemblGenomesN/AIEA
GO:0004784GO-mf superoxide dismutase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG0876 KOG Manganese superoxide dismutase JGI N/AIEA
PTHR11404Panther SUPEROXIDE DISMUTASE 2 JGI N/AIEA
PTHR11404:SF8Panther 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL JGI N/AIEA
PF00081PFAM Iron/manganese superoxide dismutases, alpha-hairpin domain JGI N/AIEA
PF02777PFAM Iron/manganese superoxide dismutases, C-terminal domain JGI N/AIEA
DETOX1-PWYSoyCyc9 superoxide radicals degradation Plant Metabolic Network ISS
DETOX1-PWY-1SoyCyc9 reactive oxygen species degradation Plant Metabolic Network ISS
GN7V-48220SoyCyc9-rxn superoxide dismutase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g050800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g050800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g12510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g050800
>Glyma.20g050800.2 sequence-type=transcript locus=Glyma.20g050800 ID=Glyma.20g050800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAAATGTGTATGTTACATTATCTCTGCTCAGCTGAACAACAAGCAACAACTTCACCATTCCCAAAGCCTGAAAGGTTTGGACTTTGAAGACTCTGTTCCCTCTTTTATGCGGGCATCACCAACAACACCCTTAGCGGTTCTTGCAACAAAGTAGCAATGGCTTCCTGTTACTTCAATCCTATCCCTACTAGTTCTCATCTCATTTTGGCTGACTTATCTAGACAGTTCAAGATTCCCAAGCTTCTTCACAGGAAAAAGAGGTTTGATGGCTCACCTAGATCCTCAAAAATCGCTGCATTTTATGGCTTGACGACCCCTCCTTATGAACTTGATGCCTTAGAGCCTTATATGAGCAAGAGGACAATTGATATGCACTGGGGTGAATATCATCAGAATTTTATAGAAGGTTTGAACAAACAGCTGGAGAAGGATGATATACTGTATGGTTACACTTTGGATGAACTAGTCAAAGTGACATACAACAATGGGAATCCTCTGCCTGAATTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCAGGAGGGGGTGATATGCCCAAACTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACAAATTTTAGGGAAAAGTTTATTGGAGCTGCTCTCTCATTATTTGGATCTGGCTGGGTTTGGCTAGTTTTGAAGAGAGAAGAGAAACGACTGGAGATAGTCAAAACTTCAAATGCCATTTGCCCAATTGTGTGGGATGACATACCAATTATCAATTTGGATTTGTGGGAGCATGCATATTATCTGGATTACAGGAATGATAGAGCAAAGTATGTGGATGTATTTATGAACCACCTTGTGTCTTGGGATGCTGCAATGGGCCGATTGACAAGAGCAGAGGCTTTTGTGAACTTAGGAGAACCTAAAATTCCTGTTGCATGAAATATTGAAACGCTTAATGATTACAGTTACAGGGGTGGCAATGGCCATATGGCATCTTAGGTGGAGTTGATAAAAGGAATGAGTAGATTTCACTCATCATATGAGTACATTAATACTGCCCCATGTGCTTCTTTCTGGTTGTCAAATTTTGCAGTGTTTAGGATTCAGGACAACTTGTAATTTGGGGGGATCTACTGAATTTAGAGGAGGCAAGGATTTCAATGTAGAACGAGAGAGAAAAAACAAGTTTGTTCTTGGACTTATTACAGTCTCATTGTATGAAAGTGTGAATGTAATTATTTATGTGGCAAGAGGCTACCAAATTTTAAAACTGACCCACAATTCTGAATGCAGTTACACTGATATAAGTACAACTCGAGGGGTTGTGTTAATCAGAAAAG
Coding sequences of Glyma.20g050800
>Glyma.20g050800.1 sequence-type=CDS polypeptide=Glyma.20g050800.1.p locus=Glyma.20g050800 ID=Glyma.20g050800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTATTTGTTTCCATTTCATTTATGAACGTGCTTACACAAGTTCAAATCTTAGCTAATGTCATGGGACAAATTTATGCACAAAATGGTTGGTTTAGAATTTCAACAAAAGGCAACAAAGTAGCAATGGCTTCCTGTTACTTCAATCCTATCCCTACTAGTTCTCATCTCATTTTGGCTGACTTATCTAGACAGTTCAAGATTCCCAAGCTTCTTCACAGGAAAAAGAGGTTTGATGGCTCACCTAGATCCTCAAAAATCGCTGCATTTTATGGCTTGACGACCCCTCCTTATGAACTTGATGCCTTAGAGCCTTATATGAGCAAGAGGACAATTGATATGCACTGGGGTGAATATCATCAGAATTTTATAGAAGGTTTGAACAAACAGCTGGAGAAGGATGATATACTGTATGGTTACACTTTGGATGAACTAGTCAAAGTGACATACAACAATGGGAATCCTCTGCCTGAATTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCAGGAGGGGGTGATATGCCCAAACTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACAAATTTTAGGGAAAAGTTTATTGGAGCTGCTCTCTCATTATTTGGATCTGGCTGGGTTTGGCTAGTTTTGAAGAGAGAAGAGAAACGACTGGAGATAGTCAAAACTTCAAATGCCATTTGCCCAATTGTGTGGGATGACATACCAATTATCAATTTGGATTTGTGGGAGCATGCATATTATCTGGATTACAGGAATGATAGAGCAAAGTATGTGGATGTATTTATGAACCACCTTGTGTCTTGGGATGCTGCAATGGGCCGATTGACAAGAGCAGAGGCTTTTGTGAACTTAGGAGAACCTAAAATTCCTGTTGCATGA

>Glyma.20g050800.2 sequence-type=CDS polypeptide=Glyma.20g050800.2.p locus=Glyma.20g050800 ID=Glyma.20g050800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCTGTTACTTCAATCCTATCCCTACTAGTTCTCATCTCATTTTGGCTGACTTATCTAGACAGTTCAAGATTCCCAAGCTTCTTCACAGGAAAAAGAGGTTTGATGGCTCACCTAGATCCTCAAAAATCGCTGCATTTTATGGCTTGACGACCCCTCCTTATGAACTTGATGCCTTAGAGCCTTATATGAGCAAGAGGACAATTGATATGCACTGGGGTGAATATCATCAGAATTTTATAGAAGGTTTGAACAAACAGCTGGAGAAGGATGATATACTGTATGGTTACACTTTGGATGAACTAGTCAAAGTGACATACAACAATGGGAATCCTCTGCCTGAATTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTCTGGGAATCCATGCAACCAGGAGGGGGTGATATGCCCAAACTAGGTCTCCTTCAACAGATTGAAAAGGATTTTGGATCATTTACAAATTTTAGGGAAAAGTTTATTGGAGCTGCTCTCTCATTATTTGGATCTGGCTGGGTTTGGCTAGTTTTGAAGAGAGAAGAGAAACGACTGGAGATAGTCAAAACTTCAAATGCCATTTGCCCAATTGTGTGGGATGACATACCAATTATCAATTTGGATTTGTGGGAGCATGCATATTATCTGGATTACAGGAATGATAGAGCAAAGTATGTGGATGTATTTATGAACCACCTTGTGTCTTGGGATGCTGCAATGGGCCGATTGACAAGAGCAGAGGCTTTTGTGAACTTAGGAGAACCTAAAATTCCTGTTGCATGA
Predicted protein sequences of Glyma.20g050800
>Glyma.20g050800.1.p sequence-type=predicted peptide transcript=Glyma.20g050800.1 locus=Glyma.20g050800 ID=Glyma.20g050800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLFVSISFMNVLTQVQILANVMGQIYAQNGWFRISTKGNKVAMASCYFNPIPTSSHLILADLSRQFKIPKLLHRKKRFDGSPRSSKIAAFYGLTTPPYELDALEPYMSKRTIDMHWGEYHQNFIEGLNKQLEKDDILYGYTLDELVKVTYNNGNPLPEFNNAAEVWNHDFFWESMQPGGGDMPKLGLLQQIEKDFGSFTNFREKFIGAALSLFGSGWVWLVLKREEKRLEIVKTSNAICPIVWDDIPIINLDLWEHAYYLDYRNDRAKYVDVFMNHLVSWDAAMGRLTRAEAFVNLGEPKIPVA*

>Glyma.20g050800.2.p sequence-type=predicted peptide transcript=Glyma.20g050800.2 locus=Glyma.20g050800 ID=Glyma.20g050800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASCYFNPIPTSSHLILADLSRQFKIPKLLHRKKRFDGSPRSSKIAAFYGLTTPPYELDALEPYMSKRTIDMHWGEYHQNFIEGLNKQLEKDDILYGYTLDELVKVTYNNGNPLPEFNNAAEVWNHDFFWESMQPGGGDMPKLGLLQQIEKDFGSFTNFREKFIGAALSLFGSGWVWLVLKREEKRLEIVKTSNAICPIVWDDIPIINLDLWEHAYYLDYRNDRAKYVDVFMNHLVSWDAAMGRLTRAEAFVNLGEPKIPVA*






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