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Report for Sequence Feature Glyma.20g049200

Feature Type:gene_model
Chromosome:Gm20
Start:9648655
stop:9659773
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g049200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49720.2AT abscisic acid responsive element-binding factor 1 JGI N/AIEA
AT3G56850.1AT ABA-responsive element binding protein 3 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF45Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA

Proteins Associated with Glyma.20g049200
LocusGene SymbolProtein Name
BZIP27 bZIP transcription factor 27
bZIP157 Basic leucine zipper transcription factor-like protein gene 157

Expression Patterns of Glyma.20g049200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g049200
ParalogEvidenceComments
Glyma.13g075000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g049200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g10600 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g049200
>Glyma.20g049200.2 sequence-type=transcript locus=Glyma.20g049200 ID=Glyma.20g049200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATCATTCCCACATCACAACACAACTCAAGTTTACACCAACTACCCCTTTTCTTCGTTTCCGTTTTCTTCTCAAATTGTTCCTATTTTCACTGTGATTCACCCCACCAAATTATGTGTTTCTCTCTGCACTTGCCAACCCCGAATTCATAGGGTCTCTCTCTTCTTATTTTCAGGTTTTGGTTTGAAGAATGGGGATTCAGACAGTGGGATCTCTAGGTAACGGGCAACAGTCTCATTTACAGCCTTCATCATTGTCTAGGCAAGGTTCATGGTATAGTCTCACTCTTGATGAGGTCAATTGTCAATTAGGAGACATGGGAAAGCCATTGGGGAGCATGAACCTTGATGAGCTTCTTCAAAATGTGTGGACTGCTGAAGCAAGCAAGTCTTCGGTGGTGGTAGGCGTGGAGAGTGAGAACATGTCGTCATCGTCTTCCTCGCTGCAACGGCAGGCCAGCTTGACGCTGGCTCGTGCATTGAGTGGGAAGACGGTGGATGATGTGTGGAGGGAAATTCAGCAAGGTCAGAAGAAAAAGTATGGAGAGGATGTGAGGAGTCAGGAGGGAGAAATGACTCTTGGTGAGACCACCTTGGAGGATTTCTTGGTGCAAGCAGGGCTTTTTGCTGAAGCTTCTATCAGTCCAGCTGTGGGGTTGGATGCAATGGATTCCCTTGCCACGCAAGGTTTCCAACAGAAAACAGGCCTGTTATCATCCTCCCCCTCAATCGGGAGTTTATCAGACACGAGACTGGGCCGGAAAAGGGATGCTTCTGATGCGTACGAGAAAACTTTGGAAAGGAGGTTGAGGAGGAAAATCAAGAATAGGGAATCTGCTGCTCGGTCCCGAGCCCGAAAACAGGTTTATCCTTCATGCTTACCATAATGAACTGGTTGGCAAGGTTTCCCGTCTAGAAGAAGAAAATGTAAAGCTCAAGAAAGAGAAGGAATTTGAAGAACGATTACTGCCTGATCCATTGCCTGAACGGAAATATCAACTTCGAAGACATAATTCTGCCTTTTTCTGACATGTTATCGTGTTCTTGATTTGATGGGGACATGTCCAGGATTGCATCACTGCACTGGTCATTGCTGTTGCTACTGCTTTGCATTTGCTCTAGTAGGAGAGTATGCTCCATATCAATCTACAATTAACTAACTATAGGGTACATATTGCAGCAAAGGTTTGATGTTCATAAGTTTTAGTAGCTTTGCTTGGAATCAGTATCAGAAAATATTTGAGTCCAGTGGAAGCCCTGGAAGGGTTGTTTTTTTGTATAATGATTATCTGTGTGTACTAGGGCTAGGCAGTTATTGAAAGGTGACCTACCAAAAAAGCTGAAGCTAGGTAAGGTAGGCATTGCTAGCATTTCGGAACTGCAATATTGTATTAGTCTAAACTAATATATGTTGATAAGTGTTAGGGGAAAATCCAGTTATGAGAATTAGTGTGCTTTGTAGCGATAATTTTCTAGAAAAGATGAAATAGCAAAAGAAAAGTTTGTTTATTATTATGTTTTCCAGTGCAGTTTGCCACCATGAACATATGATTTATTGTTTGGCTACTCCTTAATTTTGGGAAGAGCTTAATC
Coding sequences of Glyma.20g049200
>Glyma.20g049200.1 sequence-type=CDS polypeptide=Glyma.20g049200.1.p locus=Glyma.20g049200 ID=Glyma.20g049200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGATTCAGACAGTGGGATCTCTAGGTAACGGGCAACAGTCTCATTTACAGCCTTCATCATTGTCTAGGCAAGGTTCATGGTATAGTCTCACTCTTGATGAGGTCAATTGTCAATTAGGAGACATGGGAAAGCCATTGGGGAGCATGAACCTTGATGAGCTTCTTCAAAATGTGTGGACTGCTGAAGCAAGCAAGTCTTCGGTGGTGGTAGGCGTGGAGAGTGAGAACATGTCGTCATCGTCTTCCTCGCTGCAACGGCAGGCCAGCTTGACGCTGGCTCGTGCATTGAGTGGGAAGACGGTGGATGATGTGTGGAGGGAAATTCAGCAAGGTCAGAAGAAAAAGTATGGAGAGGATGTGAGGAGTCAGGAGGGAGAAATGACTCTTGGTGAGACCACCTTGGAGGATTTCTTGGTGCAAGCAGGGCTTTTTGCTGAAGCTTCTATCAGTCCAGCTGTGGGGTTGGATGCAATGGATTCCCTTGCCACGCAAGGTTTCCAACAGAAAACAGGCCTGTTATCATCCTCCCCCTCAATCGGGAGTTTATCAGACACGAGACTGGGCCGGAAAAGGGATGCTTCTGATGCGTACGAGAAAACTTTGGAAAGGAGGTTGAGGAGGAAAATCAAGAATAGGGAATCTGCTGCTCGGTCCCGAGCCCGAAAACAGGCTTACCATAATGAACTGGTTGGCAAGGTTTCCCGTCTAGAAGAAGAAAATGTAAAGCTCAAGAAAGAGAAGGAATTTGAAGAACGATTACTGCCTGATCCATTGCCTGAACGGAAATATCAACTTCGAAGACATAATTCTGCCTTTTTCTGA

>Glyma.20g049200.2 sequence-type=CDS polypeptide=Glyma.20g049200.2.p locus=Glyma.20g049200 ID=Glyma.20g049200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGATTCAGACAGTGGGATCTCTAGGTAACGGGCAACAGTCTCATTTACAGCCTTCATCATTGTCTAGGCAAGGTTCATGGTATAGTCTCACTCTTGATGAGGTCAATTGTCAATTAGGAGACATGGGAAAGCCATTGGGGAGCATGAACCTTGATGAGCTTCTTCAAAATGTGTGGACTGCTGAAGCAAGCAAGTCTTCGGTGGTGGTAGGCGTGGAGAGTGAGAACATGTCGTCATCGTCTTCCTCGCTGCAACGGCAGGCCAGCTTGACGCTGGCTCGTGCATTGAGTGGGAAGACGGTGGATGATGTGTGGAGGGAAATTCAGCAAGGTCAGAAGAAAAAGTATGGAGAGGATGTGAGGAGTCAGGAGGGAGAAATGACTCTTGGTGAGACCACCTTGGAGGATTTCTTGGTGCAAGCAGGGCTTTTTGCTGAAGCTTCTATCAGTCCAGCTGTGGGGTTGGATGCAATGGATTCCCTTGCCACGCAAGGTTTCCAACAGAAAACAGGCCTGTTATCATCCTCCCCCTCAATCGGGAGTTTATCAGACACGAGACTGGGCCGGAAAAGGGATGCTTCTGATGCGTACGAGAAAACTTTGGAAAGGAGGTTGAGGAGGAAAATCAAGAATAGGGAATCTGCTGCTCGGTCCCGAGCCCGAAAACAGGTTTATCCTTCATGCTTACCATAA
Predicted protein sequences of Glyma.20g049200
>Glyma.20g049200.1.p sequence-type=predicted peptide transcript=Glyma.20g049200.1 locus=Glyma.20g049200 ID=Glyma.20g049200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGIQTVGSLGNGQQSHLQPSSLSRQGSWYSLTLDEVNCQLGDMGKPLGSMNLDELLQNVWTAEASKSSVVVGVESENMSSSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKKYGEDVRSQEGEMTLGETTLEDFLVQAGLFAEASISPAVGLDAMDSLATQGFQQKTGLLSSSPSIGSLSDTRLGRKRDASDAYEKTLERRLRRKIKNRESAARSRARKQAYHNELVGKVSRLEEENVKLKKEKEFEERLLPDPLPERKYQLRRHNSAFF*

>Glyma.20g049200.2.p sequence-type=predicted peptide transcript=Glyma.20g049200.2 locus=Glyma.20g049200 ID=Glyma.20g049200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGIQTVGSLGNGQQSHLQPSSLSRQGSWYSLTLDEVNCQLGDMGKPLGSMNLDELLQNVWTAEASKSSVVVGVESENMSSSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKKYGEDVRSQEGEMTLGETTLEDFLVQAGLFAEASISPAVGLDAMDSLATQGFQQKTGLLSSSPSIGSLSDTRLGRKRDASDAYEKTLERRLRRKIKNRESAARSRARKQVYPSCLP*






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