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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26930.1 | AT | 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase | JGI | N/A | IEA |
| GO:0016114 | GO-bp | terpenoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0050515 | GO-mf | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | EnsemblGenomes | N/A | IEA |
| PTHR20861 | Panther | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE | JGI | N/A | IEA |
| PTHR20861:SF2 | Panther | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, CHLOROPLASTIC | JGI | N/A | IEA |
| PF00288 | PFAM | GHMP kinases N terminal domain | JGI | N/A | IEA |
| PF08544 | PFAM | GHMP kinases C terminal | JGI | N/A | IEA |
| NONMEVIPP-PWY | SoyCyc9 | methylerythritol phosphate pathway I | Plant Metabolic Network | ISS | |
| PWY-5121 | SoyCyc9 | superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | Plant Metabolic Network | ISS | |
| PWY-7560 | SoyCyc9 | methylerythritol phosphate pathway II | Plant Metabolic Network | ISS | |
| GN7V-52484 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.20g046800 not represented in the dataset |
Glyma.20g046800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g072700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g08930 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g046800.1 sequence-type=CDS polypeptide=Glyma.20g046800.1.p locus=Glyma.20g046800 ID=Glyma.20g046800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCCTCACTCTTTCTTTGCAGTAACTACGTCTCCCCCACCTCCCAAAACCCCTTCAGAAGCATCCATTTAGCTCAATTCAGACCAAATGGGACATCCAATTTTCACTCAAAGCTTCGGTTTCAGAGACCCCACTTGGTTAGAGCCATGGTTTCTGATTCCAACACTTCCAGGAGACAAATAGAGATTGTGTATGACCCTGAAGGAAGGATAAACAAGTTGGCTGATGAAGTAGACAGGGAAGCTTCTCTTTCAAGGCTTACTTTGTTCTCTCCTTGCAAGATAAATGTTTTTTTGAGAATAACCAACAAGAGGGAAGATGGGTATCATGATTTGGCATCCCTTTTTCATGTGATAAGTCTAGGTGACATAATTAAGTTCTCTTTGTCACCTTCAAAAACCAAGGATAGCCTGTCAACCAATGTGTCTGGCGTGCCCCTTGATGATAGAAATTTGATTATTAAGGCGCTTAATCTTTATAGGAAGAAGACTGGCAGCGACAAGTACTTTTGGATTCATCTTGATAAACGGGTGCCTACTGGGGCAGGGCTTGGCGGTGGAAGTAGCAATGCTGCAACTGCACTATGGGCAGCAAATCAATTTAGTGGCTGTCCTGCCTCTGAGAAAGAACTCCAAGAATGGTCAAGTGAGATTGGATCAGACATTCCCTTCTTTTTCTCTCAGGGAGCAGCCTATTGCACTGGTCGAGGAGAGGTTGTTCAGAATATTCCTCCACCAGTATCTCTGGATGTTCCAATGGTTCTCATAAAGCCCCCAGAAGCATGTTCAACTGCTGAAGTCTACAAGTGTCTACGTTTGGATCAGACTAGTAATGTCGATCCTTTAACATTGCTGGAGAAGATCTCAAAGATTGGTATCTCACAAGATGTTTGTATTAATGATTTAGAACCTCCAGCATTTGAAGTTCTCCCTTCTCTCAAAAGACTGAAGCAGCGAATTAGTGCAGCTGGTCGTGGAGAATATGATGCTGTTTTTATGTCAGGAAGTGGAAGCACCATTGTTGGAATTGGTTCTCCTGATCCCCCACAATTTGTTTATGATGATGATGAATACAAAGATGTCTTCTTGTCAGATGCCTATTTTCTCACTCGAGAGGCAAATCAGTGGTACCAAGAACCTGCTTCAAGTCCTTCTGCCTCTCCTGTTGTTTCGGAGTCTGTTTAA
>Glyma.20g046800.1.p sequence-type=predicted peptide transcript=Glyma.20g046800.1 locus=Glyma.20g046800 ID=Glyma.20g046800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSLFLCSNYVSPTSQNPFRSIHLAQFRPNGTSNFHSKLRFQRPHLVRAMVSDSNTSRRQIEIVYDPEGRINKLADEVDREASLSRLTLFSPCKINVFLRITNKREDGYHDLASLFHVISLGDIIKFSLSPSKTKDSLSTNVSGVPLDDRNLIIKALNLYRKKTGSDKYFWIHLDKRVPTGAGLGGGSSNAATALWAANQFSGCPASEKELQEWSSEIGSDIPFFFSQGAAYCTGRGEVVQNIPPPVSLDVPMVLIKPPEACSTAEVYKCLRLDQTSNVDPLTLLEKISKIGISQDVCINDLEPPAFEVLPSLKRLKQRISAAGRGEYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYKDVFLSDAYFLTREANQWYQEPASSPSASPVVSESV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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