Glyma.20g043400

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Report for Sequence Feature Glyma.20g043400

Feature Type:	gene_model
Chromosome:	Gm20
Start:	7902915
stop:	7918077
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g043400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12203.1	AT	serine carboxypeptidase-like 17	JGI	N/A	IEA
GO:0006508	GO-bp	proteolysis	EnsemblGenomes	N/A	IEA
GO:0006508	GO-bp	proteolysis	JGI	N/A	IEA
GO:0019748	GO-bp	secondary metabolic process	EnsemblGenomes	N/A	IEA
GO:0004185	GO-mf	serine-type carboxypeptidase activity	EnsemblGenomes	N/A	IEA
GO:0004185	GO-mf	serine-type carboxypeptidase activity	JGI	N/A	IEA
GO:0016747	GO-mf	transferase activity, transferring acyl groups other than amino-acyl groups	EnsemblGenomes	N/A	IEA
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI	N/A	IEA
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI	N/A	IEA
PTHR11802:SF7	Panther		JGI	N/A	IEA
PF00450	PFAM	Serine carboxypeptidase	JGI	N/A	IEA
PWY-7458	SoyCyc9	violdelphin biosynthesis	Plant Metabolic Network		ISS
PWY-7464	SoyCyc9	cyanidin 3,7-diglucoside polyacylation biosynthesis	Plant Metabolic Network		ISS
GN7V-48685	SoyCyc9-rxn	cyanidin 3,7-diglucoside acyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.20g043400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g043400 not represented in the dataset	Glyma.20g043400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.20g043400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g08455	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g043400

Limit To All Plant Sequences

>Glyma.20g043400.2 sequence-type=transcript locus=Glyma.20g043400 ID=Glyma.20g043400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCAATGGATCAATATAATGAACAGTTATATTAACTAATGGGACAATAATTGAATTCAGGAATATCAAACATTGTAATATATATGATCTGATGCAAACAAGAGGTTTGACTTTCGTGAAGTTCTTTCGTCATTGTTAGTTTAATAAGTATTCTCATTAAGCGTCTTCTTTGTTACTCATTTTTGGTGCCACAAGCATAGTGAGACAATGGTTAAGGTCTGGAAGCCATGGTGTGTTTTGATTTCTGTGCTGCATTTGTTCCTCCACACCACATCTTCTGATTTCATCGTCAAGAATCTACCAGGTTTTGGGGATCTTCCGTTCACATTGAATACTGGATACATTGGTGTTGGACAAAGAGAAGAGGTGCAGTTATATTATTACTTTGTTGAATCTCAAAGGAGTCCTTTGAATGATCCTCTTCTACTTTGGCTTGTTGGAGGTCCTGGTTGCTCTGCCCATTCTGCTTTCTTCTATGAAAATGGGCCATTAATGTTTAATTTTCACGATTTTAATGGGAGTTTTCCACAGCTTCTATTGAATCCGCACACTTGGACAAAGGTACTCAACATATTATATGTGGATGCACCTGTTGGTACGGGATATTCTTACTCTAAAACACAAGAAGGCTATTATAGCAATGACGAACAATTGGTGGAACACATGTATGATTTTTTCCATAAGTGGCTGGTGGATCACCCTGAATTCAGATCGAATCCACTTTACATTGGTGGTGGTTCTTATTCTGGCATAGTTGTTCTTCCCCTGGTTCAGAAAGTATACGAAGATTATGAAACTGGACGCTCACCAATCCTGAACATCCAAGGCCTTGTGCTTGCAAGTCCAAGACTTGACTCTTTCATGGACAATAACACAAAAGTTGAATTCGCTCACCAACGAACACTTATATCAAATGAACTATACGAGTCAATTAAATCTAATTGCAATGGTGATTATGTTAATCTTGATCCTAACAACACAAAATGTATGTCAGATTATGAAGCCTACACTGAGTTAGTTCGTTACATAAATGAATATCAAATTTTGGAACCAAGTTGTGTGATTGCACCTAAGGAGAATCAAAGAATTCTTTCTCAAGAATTAAATTATATCCACCAAACTAAATTTAGGTGTCGGGATGACTTATATGCAATTGGAGAATTATGGGCAAATGATCCACATGTTCAGAAGGCTCTTCAAGTTAGAGAGGGAACAAAAGATCACTTCCAACGATGCAATCGCAGCGCTGCATATACATGGAACGTTCCTAGTGTGGTTCAATACCTTCATAATCTTACAAACACAAACATGCGATCTCTAATTTATTGATATGCCGAGGAATACAAAAAAAGTGAGTATCACCTAACTTACGCCATTGTGAAGGTAGGTAACTCATAACCTCGATGTTATTTGCTAATTAACACTGGAAGTCGTTACATATCAGCTATCTTGCAGAACATGTTATTTTAGGCTCATTTAAAACTCTTAATTTTAAGTTTGATTATGAAAACAATTACCATTTTCACAATTTAATTTCCGCATGCGGTCTTACTTCTAATCATCAATCATCATATCTAAAGCATCATTAAGACATGCCATAACATAATGAGTACGTACGATGTCTTATGTTACTACAAAACTAACATTTCTATTGAAAAAAAATAATCTCAAAAGTGTCCCTTAAGAGAATAAATACATCAAGTACCACATAAATATATTATTTCCCTAAGTTAGTCCCCACTATGAAAATTAGGGGGAGAGAGGCACCCGGGTGAGTAGTTATTCGAGTAATAGAAGTTTAAAAACTCATGAGA

>Glyma.20g043400.3 sequence-type=transcript locus=Glyma.20g043400 ID=Glyma.20g043400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTAGGTAGTTTTTGACTAAGTTGGTATTAATTGTCACATAACATGTATTTTTTTTTTATAAATCAAAAAATTTGAAAACATGTCATGTAGACAGGTTGAGACCATGAACGCATGGTGATCTTGAAACATTTAATGATTTCTAGTCAATTTGATCATGCATGTGGACGCGTTAAATATTTGTCAAGACTCGAGTTCTCTTGTTGGCTTCAGTGTTTGCCTCCTTTCAGTAATTACACTCAGCAGCTTAAGGTTTTCCTATTTCCTACCACCCAGAAAAGGACAGGCCATCATAATGTAAACATTTATTTACATGACTTGATGTAACACTCTCATCAGTACTCAACATATTATATGTGGATGCACCTGTTGGTACGGGATATTCTTACTCTAAAACACAAGAAGGCTATTATAGCAATGACGAACAATTGGTGGAACACATGTATGATTTTTTCCATAAGTGGCTGGTGGATCACCCTGAATTCAGATCGAATCCACTTTACATTGGTGGTGGTTCTTATTCTGGCATAGTTGTTCTTCCCCTGGTTCAGAAAGTATACGAAGATTATGAAACTGGACGCTCACCAATCCTGAACATCCAAGGCCTTGTGCTTGCAAGTCCAAGACTTGACTCTTTCATGGACAATAACACAAAAGTTGAATTCGCTCACCAACGAACACTTATATCAAATGAACTATACGAGTCAATTAAATCTAATTGCAATGGTGATTATGTTAATCTTGATCCTAACAACACAAAATGTATGTCAGATTATGAAGCCTACACTGAGTTAGTTCGTTACATAAATGAATATCAAATTTTGGAACCAAGTTGTGTGATTGCACCTAAGGAGAATCAAAGAATTCTTTCTCAAGAATTAAATTATATCCACCAAACTAAATTTAGGTGTCGGGATGACTTATATGCAATTGGAGAATTATGGGCAAATGATCCACATGTTCAGAAGGCTCTTCAAGTTAGAGAGGGAACAAAAGATCACTTCCAACGATGCAATCGCAGCGCTGCATATACATGGAACGTTCCTAGTGTGGTTCAATACCTTCATAATCTTACAAACACAAACATGCGATCTCTAATTTATTGCACGGATCTTGACATGTCGATACCGTATCTTAGTTCACTTTCTATTGTCAAGTCACTTAATTTGAAATTTGATATGACTTGGCATCCATGGTTCGTTGATGGTCAAGTGGCAGGGTTAGTTTAATGAATAATGCAATTTTTTAATCAATTTATCCACAGATATGCCGAGGAATACAAAAAAAGTGAGTATCACCTAACTTACGCCATTGTGAAGGTAGGTAACTCATAACCTCGATGTTATTTGCTAATTAACACTGGAAGTCGTTACATATCAGCTATCTTGCAGAACATGTTATTTTAGGCTCATTTAAAACTCTTAATTTTAAGTTTGATTATGAAAACAATTACCATTTTCACAATTTAATTTCCGCATGCGGTCTTACTTCTAATCATCAATCATCATATCTAAAGCATCATTAAGACATGCCATAACATAATGAGTACGTACGATGTCTTATGTTACTACAAAACTAACATTTCTATTGAAAAAAAATAATCTCAAAAGTGTCCCTTAAGAGAATAAATACATCAAGTACCACATAAATATATTATTTCCCTAAGTTAGTCCCCACTATGAAAATTAGGGGGAGAGAGGCACCCGGGTGAGTAGTTATTCGAGTAATAGAAGTTTAAAAACTCATGAGA

Coding sequences of Glyma.20g043400

Limit To All Plant Sequences

>Glyma.20g043400.1 sequence-type=CDS polypeptide=Glyma.20g043400.1.p locus=Glyma.20g043400 ID=Glyma.20g043400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTAAGGTCTGGAAGCCATGGTGTGTTTTGATTTCTGTGCTGCATTTGTTCCTCCACACCACATCTTCTGATTTCATCGTCAAGAATCTACCAGGTTTTGGGGATCTTCCGTTCACATTGAATACTGGATACATTGGTGTTGGACAAAGAGAAGAGGTGCAGTTATATTATTACTTTGTTGAATCTCAAAGGAGTCCTTTGAATGATCCTCTTCTACTTTGGCTTGTTGGAGGTCCTGGTTGCTCTGCCCATTCTGCTTTCTTCTATGAAAATGGGCCATTAATGTTTAATTTTCACGATTTTAATGGGAGTTTTCCACAGCTTCTATTGAATCCGCACACTTGGACAAAGGTACTCAACATATTATATGTGGATGCACCTGTTGGTACGGGATATTCTTACTCTAAAACACAAGAAGGCTATTATAGCAATGACGAACAATTGGTGGAACACATGTATGATTTTTTCCATAAGTGGCTGGTGGATCACCCTGAATTCAGATCGAATCCACTTTACATTGGTGGTGGTTCTTATTCTGGCATAGTTGTTCTTCCCCTGGTTCAGAAAGTATACGAAGATTATGAAACTGGACGCTCACCAATCCTGAACATCCAAGGCCTTGTGCTTGCAAGTCCAAGACTTGACTCTTTCATGGACAATAACACAAAAGTTGAATTCGCTCACCAACGAACACTTATATCAAATGAACTATACGAGTCAATTAAATCTAATTGCAATGGTGATTATGTTAATCTTGATCCTAACAACACAAAATGTATGTCAGATTATGAAGCCTACACTGAGTTAGTTCGTTACATAAATGAATATCAAATTTTGGAACCAAGTTGTGTGATTGCACCTAAGGAGAATCAAAGAATTCTTTCTCAAGAATTAAATTATATCCACCAAACTAAATTTAGGTGTCGGGATGACTTATATGCAATTGGAGAATTATGGGCAAATGATCCACATGTTCAGAAGGCTCTTCAAGTTAGAGAGGGAACAAAAGATCACTTCCAACGATGCAATCGCAGCGCTGCATATACATGGAACGTTCCTAGTGTGGTTCAATACCTTCATAATCTTACAAACACAAACATGCGATCTCTAATTTATTGCACGGATCTTGACATGTCGATACCGTATCTTAGTTCACTTTCTATTGTCAAGTCACTTAATTTGAAATTTGATATGACTTGGCATCCATGGTTCGTTGATGGTCAAGTGGCAGGGTTAGTTTAA

>Glyma.20g043400.2 sequence-type=CDS polypeptide=Glyma.20g043400.2.p locus=Glyma.20g043400 ID=Glyma.20g043400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTAAGGTCTGGAAGCCATGGTGTGTTTTGATTTCTGTGCTGCATTTGTTCCTCCACACCACATCTTCTGATTTCATCGTCAAGAATCTACCAGGTTTTGGGGATCTTCCGTTCACATTGAATACTGGATACATTGGTGTTGGACAAAGAGAAGAGGTGCAGTTATATTATTACTTTGTTGAATCTCAAAGGAGTCCTTTGAATGATCCTCTTCTACTTTGGCTTGTTGGAGGTCCTGGTTGCTCTGCCCATTCTGCTTTCTTCTATGAAAATGGGCCATTAATGTTTAATTTTCACGATTTTAATGGGAGTTTTCCACAGCTTCTATTGAATCCGCACACTTGGACAAAGGTACTCAACATATTATATGTGGATGCACCTGTTGGTACGGGATATTCTTACTCTAAAACACAAGAAGGCTATTATAGCAATGACGAACAATTGGTGGAACACATGTATGATTTTTTCCATAAGTGGCTGGTGGATCACCCTGAATTCAGATCGAATCCACTTTACATTGGTGGTGGTTCTTATTCTGGCATAGTTGTTCTTCCCCTGGTTCAGAAAGTATACGAAGATTATGAAACTGGACGCTCACCAATCCTGAACATCCAAGGCCTTGTGCTTGCAAGTCCAAGACTTGACTCTTTCATGGACAATAACACAAAAGTTGAATTCGCTCACCAACGAACACTTATATCAAATGAACTATACGAGTCAATTAAATCTAATTGCAATGGTGATTATGTTAATCTTGATCCTAACAACACAAAATGTATGTCAGATTATGAAGCCTACACTGAGTTAGTTCGTTACATAAATGAATATCAAATTTTGGAACCAAGTTGTGTGATTGCACCTAAGGAGAATCAAAGAATTCTTTCTCAAGAATTAAATTATATCCACCAAACTAAATTTAGGTGTCGGGATGACTTATATGCAATTGGAGAATTATGGGCAAATGATCCACATGTTCAGAAGGCTCTTCAAGTTAGAGAGGGAACAAAAGATCACTTCCAACGATGCAATCGCAGCGCTGCATATACATGGAACGTTCCTAGTGTGGTTCAATACCTTCATAATCTTACAAACACAAACATGCGATCTCTAATTTATTGA

>Glyma.20g043400.3 sequence-type=CDS polypeptide=Glyma.20g043400.3.p locus=Glyma.20g043400 ID=Glyma.20g043400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATGATTTTTTCCATAAGTGGCTGGTGGATCACCCTGAATTCAGATCGAATCCACTTTACATTGGTGGTGGTTCTTATTCTGGCATAGTTGTTCTTCCCCTGGTTCAGAAAGTATACGAAGATTATGAAACTGGACGCTCACCAATCCTGAACATCCAAGGCCTTGTGCTTGCAAGTCCAAGACTTGACTCTTTCATGGACAATAACACAAAAGTTGAATTCGCTCACCAACGAACACTTATATCAAATGAACTATACGAGTCAATTAAATCTAATTGCAATGGTGATTATGTTAATCTTGATCCTAACAACACAAAATGTATGTCAGATTATGAAGCCTACACTGAGTTAGTTCGTTACATAAATGAATATCAAATTTTGGAACCAAGTTGTGTGATTGCACCTAAGGAGAATCAAAGAATTCTTTCTCAAGAATTAAATTATATCCACCAAACTAAATTTAGGTGTCGGGATGACTTATATGCAATTGGAGAATTATGGGCAAATGATCCACATGTTCAGAAGGCTCTTCAAGTTAGAGAGGGAACAAAAGATCACTTCCAACGATGCAATCGCAGCGCTGCATATACATGGAACGTTCCTAGTGTGGTTCAATACCTTCATAATCTTACAAACACAAACATGCGATCTCTAATTTATTGCACGGATCTTGACATGTCGATACCGTATCTTAGTTCACTTTCTATTGTCAAGTCACTTAATTTGAAATTTGATATGACTTGGCATCCATGGTTCGTTGATGGTCAAGTGGCAGGGTTAGTTTAA

Predicted protein sequences of Glyma.20g043400

Limit To All Plant Sequences

>Glyma.20g043400.1.p sequence-type=predicted peptide transcript=Glyma.20g043400.1 locus=Glyma.20g043400 ID=Glyma.20g043400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKVWKPWCVLISVLHLFLHTTSSDFIVKNLPGFGDLPFTLNTGYIGVGQREEVQLYYYFVESQRSPLNDPLLLWLVGGPGCSAHSAFFYENGPLMFNFHDFNGSFPQLLLNPHTWTKVLNILYVDAPVGTGYSYSKTQEGYYSNDEQLVEHMYDFFHKWLVDHPEFRSNPLYIGGGSYSGIVVLPLVQKVYEDYETGRSPILNIQGLVLASPRLDSFMDNNTKVEFAHQRTLISNELYESIKSNCNGDYVNLDPNNTKCMSDYEAYTELVRYINEYQILEPSCVIAPKENQRILSQELNYIHQTKFRCRDDLYAIGELWANDPHVQKALQVREGTKDHFQRCNRSAAYTWNVPSVVQYLHNLTNTNMRSLIYCTDLDMSIPYLSSLSIVKSLNLKFDMTWHPWFVDGQVAGLV*

>Glyma.20g043400.2.p sequence-type=predicted peptide transcript=Glyma.20g043400.2 locus=Glyma.20g043400 ID=Glyma.20g043400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKVWKPWCVLISVLHLFLHTTSSDFIVKNLPGFGDLPFTLNTGYIGVGQREEVQLYYYFVESQRSPLNDPLLLWLVGGPGCSAHSAFFYENGPLMFNFHDFNGSFPQLLLNPHTWTKVLNILYVDAPVGTGYSYSKTQEGYYSNDEQLVEHMYDFFHKWLVDHPEFRSNPLYIGGGSYSGIVVLPLVQKVYEDYETGRSPILNIQGLVLASPRLDSFMDNNTKVEFAHQRTLISNELYESIKSNCNGDYVNLDPNNTKCMSDYEAYTELVRYINEYQILEPSCVIAPKENQRILSQELNYIHQTKFRCRDDLYAIGELWANDPHVQKALQVREGTKDHFQRCNRSAAYTWNVPSVVQYLHNLTNTNMRSLIY*

>Glyma.20g043400.3.p sequence-type=predicted peptide transcript=Glyma.20g043400.3 locus=Glyma.20g043400 ID=Glyma.20g043400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYDFFHKWLVDHPEFRSNPLYIGGGSYSGIVVLPLVQKVYEDYETGRSPILNIQGLVLASPRLDSFMDNNTKVEFAHQRTLISNELYESIKSNCNGDYVNLDPNNTKCMSDYEAYTELVRYINEYQILEPSCVIAPKENQRILSQELNYIHQTKFRCRDDLYAIGELWANDPHVQKALQVREGTKDHFQRCNRSAAYTWNVPSVVQYLHNLTNTNMRSLIYCTDLDMSIPYLSSLSIVKSLNLKFDMTWHPWFVDGQVAGLV*

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