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Report for Sequence Feature Glyma.20g042500

Feature Type:gene_model
Chromosome:Gm20
Start:7649244
stop:7649679
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g042500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48520.1AT GLU-ADT subunit B JGI N/AIEA
GO:0070681GO-bp glutaminyl-tRNAGln biosynthesis via transamidation EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity JGI N/AIEA
GO:0016884GO-mf carbon-nitrogen ligase activity, with glutamine as amido-N-donor EnsemblGenomesN/AIEA
GO:0050567GO-mf glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity EnsemblGenomesN/AIEA
PTHR11659Panther GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED JGI N/AIEA
PF02934PFAM GatB/GatE catalytic domain JGI N/AIEA
GN7V-64532SoyCyc9-rxn asparaginyl-tRNA synthase (glutamine-hydrolysing) Plant Metabolic Network ISS

Expression Patterns of Glyma.20g042500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g042500 not represented in the dataset
Glyma.20g042500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g042500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g08306 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g042500
>Glyma.20g042500.1 sequence-type=CDS polypeptide=Glyma.20g042500.1.p locus=Glyma.20g042500 ID=Glyma.20g042500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCATTTGTTTATGGCAGGTTGAAATAAAAAATTTGAACTCATTTTCATCAGTGATTAGAGCTATTCATTTTGAAATTTCTAGGCAGGTGCAACTCCATAGTGAAGGCCAGGAAGATCAGATAGTACAGGAAACTCCTTTATGGGAAGAAGGCTCTTCTCAGGCTAGTGCTATATTAACAATTGCAACGAGGAAAAAGGAAAGGCTTGGTGATTATCAATATTTTGCAGAACCAGACCTTCCAACAATAATCCTTTCTCAAGAATATGTTGATGGTATAAAAAATTCTTTACCAGAGCTTCTAGAAATTAAGCAGAGAAGATGA
Predicted protein sequences of Glyma.20g042500
>Glyma.20g042500.1.p sequence-type=predicted peptide transcript=Glyma.20g042500.1 locus=Glyma.20g042500 ID=Glyma.20g042500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVICLWQVEIKNLNSFSSVIRAIHFEISRQVQLHSEGQEDQIVQETPLWEEGSSQASAILTIATRKKERLGDYQYFAEPDLPTIILSQEYVDGIKNSLPELLEIKQRR*






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