Glyma.20g041000

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Report for Sequence Feature Glyma.20g041000

Feature Type:	gene_model
Chromosome:	Gm20
Start:	7205382
stop:	7207423
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g041000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29070.1	AT	Phospholipase A2 family protein	JGI	N/A	IEA
GO:0006644	GO-bp	phospholipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0050482	GO-bp	arachidonic acid secretion	EnsemblGenomes	N/A	IEA
GO:0004623	GO-mf	phospholipase A2 activity	EnsemblGenomes	N/A	IEA
LIPASYN-PWY	SoyCyc9	phospholipases	Plant Metabolic Network		ISS
PWY-6803	SoyCyc9	phosphatidylcholine acyl editing	Plant Metabolic Network		ISS
PWY-7416	SoyCyc9	phospholipid remodeling (phosphatidylcholine, yeast)	Plant Metabolic Network		ISS
GN7V-65564	SoyCyc9-rxn	phospholipase A₂	Plant Metabolic Network		ISS

Expression Patterns of Glyma.20g041000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g041000

Paralog	Evidence	Comments
Glyma.07g232000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g041000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g08070	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.20g041000

Limit To All Plant Sequences

>Glyma.20g041000.1 sequence-type=CDS polypeptide=Glyma.20g041000.1.p locus=Glyma.20g041000 ID=Glyma.20g041000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGGCTGTTTTTTACTTTTTCTGTTGGCAGGATATAAAAAAATTTGGTTCTGTGGTAGTTATCTGTGTACTTTGGTGACACTAGTTTTTTCCACAATGGACTTGGGGTTTCTTGGTAAAATCCCTTGGTTTAATGCTCAATTGAACACAGATTCGGGGAGTAATTCAGTTCCTATCGATACATTCACTGAACAACCTAAACAAGAACTTGGCAATGATTCCAAATTGCCCTTTCTTTCATTGTTTCCTTGGGTGAATCGTGCTGGAGACAAATTTCAAAGGCCATCTACTATCAACAAAGAGTTAAAAAGGCAAGCACGCCGCAGGAATGGTGTAGGAAAAGATGGTGAGGTTAACCCTTTGCGCTTCCGGCCGTATGTGTGTAAGGTTCCATGGCATACAGGGGTTAGAGCATTTCTTTCTCAGTTGTTCCCTCGATATGGACATTACTGTGGACCAAACTGGTCAAGCGGGAAAGACGGAGGATCTCTTGTTTGGGATAGGCGACCGATTGATTGGTTGGATTTCTGCTGTTACTGCCATGATATAGGGTATGATACTCACGATCAAGCGAAGCTGCTGAAGGCCGACTTAGCATTTCTCGAATGTTTGGAAAAGCACCATGGGAGTACTAAAGGAGACCCTCATGTTGCTCCTATTTATAAGACAATGTGTCTTAATGGTCTGAGGAATTTTCTGATACCATACAGAAGGAATATTGTGAATCTACAACAGTTTGGGCAACCTATGATTCAGTTTGGATGGCTAAGCAATTTGAGATGGGGAAGTTGGAACTTTCAGAAAACTCATAGATTGAGCTCAGTGGGAGGAAGTACTGTGTCATAG

Predicted protein sequences of Glyma.20g041000

Limit To All Plant Sequences

>Glyma.20g041000.1.p sequence-type=predicted peptide transcript=Glyma.20g041000.1 locus=Glyma.20g041000 ID=Glyma.20g041000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGCFLLFLLAGYKKIWFCGSYLCTLVTLVFSTMDLGFLGKIPWFNAQLNTDSGSNSVPIDTFTEQPKQELGNDSKLPFLSLFPWVNRAGDKFQRPSTINKELKRQARRRNGVGKDGEVNPLRFRPYVCKVPWHTGVRAFLSQLFPRYGHYCGPNWSSGKDGGSLVWDRRPIDWLDFCCYCHDIGYDTHDQAKLLKADLAFLECLEKHHGSTKGDPHVAPIYKTMCLNGLRNFLIPYRRNIVNLQQFGQPMIQFGWLSNLRWGSWNFQKTHRLSSVGGSTVS*

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