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Report for Sequence Feature Glyma.20g040700

Feature Type:gene_model
Chromosome:Gm20
Start:7168826
stop:7175411
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g040700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19400.1AT Telomerase activating protein Est1 JGI N/AIEA
GO:0000184GO-bp nuclear-transcribed mRNA catabolic process, nonsense-mediated decay EnsemblGenomesN/AIEA
GO:0006406GO-bp mRNA export from nucleus EnsemblGenomesN/AIEA
GO:0007004GO-bp telomere maintenance via telomerase EnsemblGenomesN/AIEA
GO:0043487GO-bp regulation of RNA stability EnsemblGenomesN/AIEA
GO:0090501GO-bp RNA phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0005697GO-cc telomerase holoenzyme complex EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004540GO-mf ribonuclease activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0042162GO-mf telomeric DNA binding EnsemblGenomesN/AIEA
GO:0043021GO-mf ribonucleoprotein complex binding EnsemblGenomesN/AIEA
GO:0070034GO-mf telomerase RNA binding EnsemblGenomesN/AIEA
KOG2162 KOG Nonsense-mediated mRNA decay protein JGI N/AIEA
PTHR15696Panther SMG-7 (SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7) JGI N/AIEA
PF10374PFAM Telomerase activating protein Est1 JGI N/AIEA

Expression Patterns of Glyma.20g040700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g040700
ParalogEvidenceComments
Glyma.07g231800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g040700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g08040 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g040700
>Glyma.20g040700.1 sequence-type=CDS polypeptide=Glyma.20g040700.1.p locus=Glyma.20g040700 ID=Glyma.20g040700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAGTAGAAATGGATAAAATGTCTGCTCCTTCATCAAGGGAGCGTGCACAACGCCTCTATGATAAGAACCTTGAATTGGAGAGTAAGCGTCGGAGGTCGGCTAAGGCGCGTGTCCCATCAGATCCTAATGCTTGGCAACAGATACGTGAGAATTATGAAGCAATAATTCTTGAGGATCATGCTTTCTCTGAGCAGCACAATATTGAATATGCTCTTTGGCAGTTGCATTATAAGCGGATTGAGGAGTTTAGGGCATACTTCAGTGCTGCTCTTTCTTCTACAAATGCAAACTCATCTCAGGGAGGGAAAGGTCCCGCGCGACCTGATCGGATTACTAAAATAAGGCTACAATTTAAGACTTTCCTTTCAGAAGCAACTGGATTTTACCATGATCTTATTACGAAAATCAGAGCTAAGTATGGTCTTCCTCTTGGTTACTTTGAGGATTCAGAGAAAGATGGAAAGAAATCTGCTGAGATGAAGAAAGGTTTAGTAGCTTGTCATCGTTGTCTGATATACTTGGGTGATCTTGCTCGTTATAAAGGAATGTATGGTGAAGGTGACTCAATTAACCGGGAGTTCACCGCAGCTTCTAGTTATTACTTGCAAGCTGCATCACTTTGGCCTTCTAGTGGGAACCCCCATCATCAGCTTGCTTTGTTGGCTTCATATTCTGGGGATGAACTGGTGGCTATTTATCGATATTTTCGTAGTCTGGCAGTAGATAGTCCATTTACAACTGCCAGAGAAAACTTGATAGTTGCATTTGAGAAGAATCGTCAAAGTTTTTCTCAGCTTTCTGGTGATGTTAAAGCTCTTGCAGTCAAGGAATCTTCTGTGCGATCAACTGGCAAAGGAAGAGGAAAAGGGGAAGCAAAACTTGCAACAAGGGGTACTGGTGTTGATGCCAGTCCTAGAACAGGAGCATCCAGTATACAGGAAACATATAAATACTTCTGCACGCGCTTTGTCCGTCTAAATGGAATCTTGTTTACACGCACAAGCATTGAGACTTTTGCTGAAGTTCTTGCTGTTGTAAGCACTGGCCTGCGTGAGCTTCTGTCTTCCGGTCAAGATGAAGAGCTGAATTTTGGGACAGACACTCCTGAGAATGCACTTGTCATCGTCAGAATTGTCTGCATTCTAGTATTCACAGTTTATAATGTGAACAAGGAATCTGAAGGTCAAACTTATTCAGAAATTGTACAGCGTGCTGTTCTGCTTCAGAATGCATTTACAGCAGCTTTTGAATTGATGGGTTACCTAATAGAGAGATGTGCACAGCTGCGTGATCCTTCTTCTAGTTATCTTTTGCCAGGCATTTTGGTTTTTGTTGAGTGGTTGGCTTTTTATCCAGATCTTGCTGCAGGCAATGATGTGGATGAAAATCAGGCAAATTTGAGATCAGAATTTTGGAATCGTTGTGTATCCTTCTTGAATAAGCTGCTTTCAGTTGGGCCTATGTCTATTGATGATGACGAAGAGGAGACTTGCTTTAATAACATGAGCAGGTATGAGGAAGGGGAAACTGAAAACCGACATGCTTTGTGGGAGGACTCCGAGTTAAGGGGATTTATTCCACTTCTTCCTGCACAAACCATCCTGGATTTTTCAAGGAAGCATTCCATTGTAAGTGATGGTGATAAGGAAAGAAAAGCTCGGATCAAAAGGATTTTAGCTGCTGGGAAGGCTTTAGCAAATGTTGTTAAGGTTGATAAACAAATGATCTATTTTGATTCAAAGGTGAAGAAATTTGTAATTGGTGTTGAGCCTCAAACTGCAGATGATTTTGGTTTTTCCACCTATTCAGGCATGTCGAATGCAAAAGAGTTAGTGCAAGAAAATCCTGCACAGAAATCGAAGATGGAAATTGTTCAGTCAAACCAACACCAGCATATGGAAGGAGATGATGACGATGAGGTTATTGTTTTCAAACCTGTAGTGGCTGAGACACGAGCTGATGTGATTGCCTCATCATGGGCACCCCATGTGGGTTTGGAACCTTTTCCAAAAGCATCTGGAGGGGATTTAATATTTCATGTTAATTCTACTTCTAATCCTCTAAGTAACCTAAGTCATCAAACTTTATCTGTTCCTGGTGGTGGTATGGTGCCTCAACACCTGCAACCAGTTCAGCCACATACATCAAGGTGGTTAGAGGAGGAAATTTCTCTTGCTAACAATTTAAAAGGTCTTGGGTTATTTGAGAATGGACATGTGATGAAACCTGGTCTACAAGAAGCGGTTGGCTTCTCCAACCATGTTTCACTTCCTTTTCCTATCCAACAATCTATAGGTGCTGATACTAATGGCATGTTTTATGGTTTCTCAAAAGCTTTGGAGTCTGCAGTACCATCCAAAGTTGATACCATTGCATCTTCTGGAGTAGTTACTGATAATTTAGCTGTAAAAACGTCAGCTTTGCCAGTTGGTTCAAGAAAAGCCCCAGTCAGTCGACCTACTAGGCACCTTGGACCTCCTCCTGGTTTCAGTCATGTTCCTCCCAAACAAGGTATTGAATCCACCGTTTCAGATTCAATTAGTGGGAACCCAATTATGGATGATTATAGTTGGTTGGATGGCTATCATTTGCATTCATCAACAAAAGGATTAGGCTCCAATGGTCCTCTTAACTACTCTCAGTCAAATTCTCAGCAAGTCAGTAACAACGGCTTGAGTCCTACTGCCAGCTTTCCCTTTCCTGGAAAACAAGTTCCTCCTGTGCCTCTTCAAGTGGAGAAACAGAATGGTTGGCAAGATTATCAAACTTATGATCTTTTAAAATCACATCATGGTCAGCAGCTTCAGCCACAACAGCTCACAACTGGAAACCAGCAGTTTTCTCCTCTGCCCGAGCAATTTCAAGGACAGTCAATGTGGACAGGTCGTTACTTTGTGTGA
Predicted protein sequences of Glyma.20g040700
>Glyma.20g040700.1.p sequence-type=predicted peptide transcript=Glyma.20g040700.1 locus=Glyma.20g040700 ID=Glyma.20g040700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIVEMDKMSAPSSRERAQRLYDKNLELESKRRRSAKARVPSDPNAWQQIRENYEAIILEDHAFSEQHNIEYALWQLHYKRIEEFRAYFSAALSSTNANSSQGGKGPARPDRITKIRLQFKTFLSEATGFYHDLITKIRAKYGLPLGYFEDSEKDGKKSAEMKKGLVACHRCLIYLGDLARYKGMYGEGDSINREFTAASSYYLQAASLWPSSGNPHHQLALLASYSGDELVAIYRYFRSLAVDSPFTTARENLIVAFEKNRQSFSQLSGDVKALAVKESSVRSTGKGRGKGEAKLATRGTGVDASPRTGASSIQETYKYFCTRFVRLNGILFTRTSIETFAEVLAVVSTGLRELLSSGQDEELNFGTDTPENALVIVRIVCILVFTVYNVNKESEGQTYSEIVQRAVLLQNAFTAAFELMGYLIERCAQLRDPSSSYLLPGILVFVEWLAFYPDLAAGNDVDENQANLRSEFWNRCVSFLNKLLSVGPMSIDDDEEETCFNNMSRYEEGETENRHALWEDSELRGFIPLLPAQTILDFSRKHSIVSDGDKERKARIKRILAAGKALANVVKVDKQMIYFDSKVKKFVIGVEPQTADDFGFSTYSGMSNAKELVQENPAQKSKMEIVQSNQHQHMEGDDDDEVIVFKPVVAETRADVIASSWAPHVGLEPFPKASGGDLIFHVNSTSNPLSNLSHQTLSVPGGGMVPQHLQPVQPHTSRWLEEEISLANNLKGLGLFENGHVMKPGLQEAVGFSNHVSLPFPIQQSIGADTNGMFYGFSKALESAVPSKVDTIASSGVVTDNLAVKTSALPVGSRKAPVSRPTRHLGPPPGFSHVPPKQGIESTVSDSISGNPIMDDYSWLDGYHLHSSTKGLGSNGPLNYSQSNSQQVSNNGLSPTASFPFPGKQVPPVPLQVEKQNGWQDYQTYDLLKSHHGQQLQPQQLTTGNQQFSPLPEQFQGQSMWTGRYFV*






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