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Report for Sequence Feature Glyma.20g036400

Feature Type:gene_model
Chromosome:Gm20
Start:5256156
stop:5260112
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g036400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02960.1AT RING/FYVE/PHD zinc finger superfamily protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1609 KOG Protein involved in mRNA turnover and stability JGI N/AIEA
PTHR23012Panther MEMBRANE ASSOCIATED RING FINGER JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA
PF12428PFAM Protein of unknown function (DUF3675) JGI N/AIEA

Expression Patterns of Glyma.20g036400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g036400
ParalogEvidenceComments
Glyma.07g230100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g036400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g04870 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g036400
>Glyma.20g036400.2 sequence-type=transcript locus=Glyma.20g036400 ID=Glyma.20g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGGCAACGCAAGACTCCAACAACATCATCATCAAAGCACCCCTTCTTCTCCGAAATGACCATAATGTCTCTTTCTACGTTCAAAAATTCCAACAACTTAGTATTCTAATTACACAAAGCCTCCACGAACAAAAACAAAACAAATTCCCTATACATTCGCACAACGCCATTTTATCATACATTTTCtctttctttctctcttccttgtttttcgctcaagccttttctctctctctttcttACGAGTTGCAAATAAAACTCCCCTTTTTCTCCGGATCAATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGCGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACACCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCACCAACAATGAATACACACCAGCAGGAACAAGTGTAATTTTTTGTATGCCACCAGTGTATGTAACAAGGCTTGTTGGAATGATGCCATGCATTTTTTTACTCATGATTTTCTGAGCTCTAATTTACGTACATACACACTAGCTTGAGCTACTTTGAGATGGTGCATAATATTTCTTGGATCCATTGCCTTAGAAAAGAAACATCTCATTTTGTTGTATTGCAGCTTCAAGTCTTTGAAAGTTATAGCAATGTTAATTAAGCTAAAAAGTTAACATGTCATTCCTTAGGGATAAGGTTGTTTCCGTGCCTGTTTTTCTGCACCGTAATAATCATAATGATTCAAGCAAACAAACGGTGGGAGAATTTGA

>Glyma.20g036400.3 sequence-type=transcript locus=Glyma.20g036400 ID=Glyma.20g036400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGGCAACGCAAGACTCCAACAACATCATCATCAAAGCACCCCTTCTTCTCCGAAATGACCATAATGTCTCTTTCTACGTTCAAAAATTCCAACAACTTAGTATTCTAATTACACAAAGCCTCCACGAACAAAAACAAAACAAATTCCCTATACATTCGCACAACGCCATTTTATCATACATTTTCtctttctttctctcttccttgtttttcgctcaagccttttctctctctctttcttACGAGTTGCAAATAAAACTCCCCTTTTTCTCCGGATCAATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGCGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACACCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAATAAATTTGATTTTATAACAACATAGATGTTTGGTTGTTTCTAGGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCACCAACAATGAATACACACCAGCAGGAACAAGTGTAATTTTTTGTATGCCACCAGTGTATGTAACAAGGCTTGTTGGAATGATGCCATGCATTTTTTTACTCATGATTTTCTGAGCTCTAATTTACGTACATACACACTAGCTTGAGCTACTTTGAGATGGTGCATAATATTTCTTGGATCCATTGCCTTAGAAAAGAAACATCTCATTTTGTTGTATTGCAGCTTCAAGTCTTTGAAAGTTATAGCAATGTTAATTAAGCTAAAAAGTTAACATGTCATTCCTTAGGGATAAGGTTGTTTCCGTGCCTGTTTTTCTGCACCGTAATAATCATAATGATTCAAGCAAACAAACGGTGGGAGAATTTGA
Coding sequences of Glyma.20g036400
>Glyma.20g036400.1 sequence-type=CDS polypeptide=Glyma.20g036400.1.p locus=Glyma.20g036400 ID=Glyma.20g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGCGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACACCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCACCAACAATGAATACACACCAGCAGGAACAAGTGTAA

>Glyma.20g036400.2 sequence-type=CDS polypeptide=Glyma.20g036400.2.p locus=Glyma.20g036400 ID=Glyma.20g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGCGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACACCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCCGGGCAGCGTAGGGGTCTGCAGTTTGCAATAGCACCAGGACCACCAACAATGAATACACACCAGCAGGAACAAGTGTAA

>Glyma.20g036400.3 sequence-type=CDS polypeptide=Glyma.20g036400.3.p locus=Glyma.20g036400 ID=Glyma.20g036400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCGATCATCTGGTGCTGTTCGTGGACCGGCTGGTGCGACCCGTGCCGATGGTCCAGCCGCTGGCCCAACAGCCCCCCGAGCCCGCGACGCCCGTTGATGAGGCGGCGGCGGGGCCATCCGGGTCGTCTCCGGCGGCGGAGGAAGACGGTGACGACGGCGGAGAGGATGCGCCGCTGCTGCAGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACAGCGTCAGCGGTTTGGAGACACCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGTCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCTCAGCCTGAAGAAACTACCCTTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCATTGGACTTGCGTGATCCCCGACTCTTAGCAATTGCAGAGGCTGAACGTCAATTCTTGGAAGCTGAATACGATGGATATGCTGCTTCTCATGCTAGTGGAGCTGCATTTTGTCGTTCAGTTGCTTTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAATAAATTTGATTTTATAA
Predicted protein sequences of Glyma.20g036400
>Glyma.20g036400.1.p sequence-type=predicted peptide transcript=Glyma.20g036400.1 locus=Glyma.20g036400 ID=Glyma.20g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDHLVLFVDRLVRPVPMVQPLAQQPPEPATPVDEAAAGPSGSSPAAEEDGDDGGEDAPLLQLAECRICQEEDSVSGLETPCSCSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPQPEETTLDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTMNTHQQEQV*

>Glyma.20g036400.2.p sequence-type=predicted peptide transcript=Glyma.20g036400.2 locus=Glyma.20g036400 ID=Glyma.20g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDHLVLFVDRLVRPVPMVQPLAQQPPEPATPVDEAAAGPSGSSPAAEEDGDDGGEDAPLLQLAECRICQEEDSVSGLETPCSCSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPQPEETTLDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTMNTHQQEQV*

>Glyma.20g036400.3.p sequence-type=predicted peptide transcript=Glyma.20g036400.3 locus=Glyma.20g036400 ID=Glyma.20g036400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDHLVLFVDRLVRPVPMVQPLAQQPPEPATPVDEAAAGPSGSSPAAEEDGDDGGEDAPLLQLAECRICQEEDSVSGLETPCSCSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPQPEETTLDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILMALLLLRHALSVTDSDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQINLIL*






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