SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14040.1 | AT | EXS (ERD1/XPR1/SYG1) family protein | JGI | N/A | IEA |
| GO:0005802 | GO-cc | trans-Golgi network | EnsemblGenomes | N/A | IEA |
| GO:0005886 | GO-cc | plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| KOG1162 | KOG | Predicted small molecule transporter | JGI | N/A | IEA |
| PTHR10783 | Panther | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED | JGI | N/A | IEA |
| PTHR10783:SF4 | Panther | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1 | JGI | N/A | IEA |
| PF03105 | PFAM | SPX domain | JGI | N/A | IEA |
| PF03124 | PFAM | EXS family | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PHO1-H10 | PHO1 family protein | |
| PHO1;H10 | Phosphate responsive 1 gene H10 |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g04150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g032500.1 sequence-type=CDS polypeptide=Glyma.20g032500.1.p locus=Glyma.20g032500 ID=Glyma.20g032500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGTTTGGGAAAGAATACACCTCCCAAATGGTGCCAGAATGGCAAGAAGCATACATGGATTACAATCTTCTGAAAACCCTTTTGAAAGAAATCCAACGCTTCAAACTTAGGAACAAGCCTTCTCCCACCCCAAGTGGTCTAAGGAGAAAGCTAACACTATACAGAGCCTTCAGTGGCCTCACACAACAAAGACACTACCAACAACTTACTCCCTCAGAACAAGACATAGAGAGCCAACCCATTATGGTGCACTCAGTGAACAACCATGATGGTTCTGAGAAGTACGAAACTACGTTCCGTATGACTTCAGAAGAAGGTGGAGAATACGAGTTGGTGTATTTCAAGAGGCTCGATGATGAGTTCAACAAAGTGGGCAAGTTTTATAGATCAAAAGTGGAGGAAGTGTTGAAGGAAGCTGCAATCCTCAACAAGCAAATGGATGCTTTGATAGCTTTCAGGATCAAAGTTGAGAACCCAACTGGGTCCTTTGATCGATCTGTTGAGATGACTCGTCTTGCTTCTGATGTTGCTTCTTCATCTGCTGTGTTGGCAGCTTCCACACCCAGAGGAGCCAAATTGAACAGAAAGGTTTCCATGGTCATGGAGGTGATTGAGGAAAGTAGCACTCATCATGAACAATCAGATGATGATGGTTCTAATGATGATCAAGAAGAACAAGTAAAACAAACTGTGAAACCAAAAGTTGAGGTACAGAAGCTAAAGAATATCACTGGTACTAGACCAACTCCTTTGGAAGTACTTGATCGTGTGCAATTCAACCACACCCATGAAACTCCACGTTCAACTATAAAAGGTGTTCTCAATTTCCCTGGCCATGCAGAATTAAATTTCAGCAGAAAAAATTTGAACAAAGTTGAGGAACAACTTAAAAGGTCATTCATTGAATTCTACCGCAAGCTTAGGCTTCTTAAAAGTTATAGTTTTCTAAATACCTTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATCACGTCAAGAGATGCAGCTAAAGCTTATATGAAAATGGTGGATAACTCCCACCTTGGAAGCTCTGATGAGGTCACAAAGCTCATGGATAGGGTGGAAAAAACATTCACTAAGCACTTCTACAACTCAAATCGTAATAAAGCCATGAGCATCTTAAGACCAAAAGCAAAAAGAGAAAGACATAGAGTTACATTTTCCACGGGGTTCTTAGCAGGATGCACAGCAGCTCTAATCTTAGCCCTTATTCTAATCGTTCGTACCCGTCACATATTGCAAACGCCTGGGAGTACTAAGTACATGGATACCTTGTTCCCACTTAACAGTCTGTATGGATTTGTAGTTCTACACTTGCTGATGTATGCTGCAAATATATACTATTGGAGGCGATACAGAGTGAATCACTCATTCATATTTGGTTTTAAGCAAGGCATTGAGTTAGGCTACAATCAAGTCCTTCTCCTAGGTTTTGGTCTAGCAGTGTTGGCACTCGGCGGCGTGCTTGTAAACCTAGACATGCAGATAGATCCACAGACAAAAGATTACCAAACATTTACTGAACTTATTCCGCTCATCTTGCTTCTTGTTGTGATTGCTATCTTATTGTGCCCTATAAACATCTTTTATCGCTCAAGCAGGGTTTTCTTCCTCATATGCTTGTTTCACTGCATATGTGCCCCTCTTTACAAGGTCACACTCCCGGATTTCTTCTTGGCAGATCAATTTACTAGCCAGGTGCAAGCCTTGAGAGATTTAGAGTTCTACATTTGCTACTACGGCTGGGGGGATTTCAAACATAGAGAAAACACTTGCAACAAAAGCAGTGTATTCATAACTTTTTCATTCATAATTGCTGTTATTCCTTATTGGTCTCGTTTCCTCCAGTGTCTTAGGCGCCTGTTCGAAGAGAAAGATCCCATGCAAGGATATAACGGATTGAAATATTTCCTCACAATTATTGCTGTTTGCCTAAGGACAGCCTATAGTCTTAACAAATCAACGGCATGGAATGTGCTGGCGTGGATTTTCTCGATATTTGCAGCAGTTGCATCTACATATTGGGACCTTGTAATTGATTGGGGGCTTTTGCAAAAGGAATCCAAGAACCGCTGGTTGAGAGATAAACTTGCAGTTCCTCATAAAAGTGTTTATTTCATAGCCATGGTCCTTAATGTGTTGTTGAGATTTGCCTGGTTGCAGACTGTCTTGAATTTCAAGTTTAGCTTCTTGCATAAACAAGCCTTGACTACCATTGTTGCATGTCTAGAGATCATTCGTCGTGGCATATGGAACTTCTTTAGAGTTGAGAATGAGCACTTGACTAATGTTGGCAAGTACCGTGCATTCAAGTCAGTGCCTCTACCCTTCAATTACGAAGAAGACGAAGATAAAGAGGAGTGA
>Glyma.20g032500.1.p sequence-type=predicted peptide transcript=Glyma.20g032500.1 locus=Glyma.20g032500 ID=Glyma.20g032500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKFGKEYTSQMVPEWQEAYMDYNLLKTLLKEIQRFKLRNKPSPTPSGLRRKLTLYRAFSGLTQQRHYQQLTPSEQDIESQPIMVHSVNNHDGSEKYETTFRMTSEEGGEYELVYFKRLDDEFNKVGKFYRSKVEEVLKEAAILNKQMDALIAFRIKVENPTGSFDRSVEMTRLASDVASSSAVLAASTPRGAKLNRKVSMVMEVIEESSTHHEQSDDDGSNDDQEEQVKQTVKPKVEVQKLKNITGTRPTPLEVLDRVQFNHTHETPRSTIKGVLNFPGHAELNFSRKNLNKVEEQLKRSFIEFYRKLRLLKSYSFLNTLAFSKIMKKYDKITSRDAAKAYMKMVDNSHLGSSDEVTKLMDRVEKTFTKHFYNSNRNKAMSILRPKAKRERHRVTFSTGFLAGCTAALILALILIVRTRHILQTPGSTKYMDTLFPLNSLYGFVVLHLLMYAANIYYWRRYRVNHSFIFGFKQGIELGYNQVLLLGFGLAVLALGGVLVNLDMQIDPQTKDYQTFTELIPLILLLVVIAILLCPINIFYRSSRVFFLICLFHCICAPLYKVTLPDFFLADQFTSQVQALRDLEFYICYYGWGDFKHRENTCNKSSVFITFSFIIAVIPYWSRFLQCLRRLFEEKDPMQGYNGLKYFLTIIAVCLRTAYSLNKSTAWNVLAWIFSIFAAVASTYWDLVIDWGLLQKESKNRWLRDKLAVPHKSVYFIAMVLNVLLRFAWLQTVLNFKFSFLHKQALTTIVACLEIIRRGIWNFFRVENEHLTNVGKYRAFKSVPLPFNYEEDEDKEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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