Glyma.20g031800

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Report for Sequence Feature Glyma.20g031800

Feature Type:	gene_model
Chromosome:	Gm20
Start:	3983899
stop:	3991235
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g031800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25540.1	AT	phytochrome and flowering time regulatory protein (PFT1)	JGI	N/A	IEA
PTHR12433	Panther	PROSTATE TUMOR OVEREXPRESSED GENE 1 (PTOV1)	JGI	N/A	IEA
PTHR12433:SF5	Panther		JGI	N/A	IEA
PF11265	PFAM	Mediator complex subunit 25 von Willebrand factor type A	JGI	N/A	IEA

Proteins Associated with Glyma.20g031800

Locus	Gene Symbol	Protein Name
	MED25-4	Mediator Complex 25 gene 4

Expression Patterns of Glyma.20g031800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g031800 not represented in the dataset	Glyma.20g031800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.20g031800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g03988	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g031800

Limit To All Plant Sequences

>Glyma.20g031800.2 sequence-type=transcript locus=Glyma.20g031800 ID=Glyma.20g031800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTATGTATATGATGGAAAGTCTAGATTTCTATAAAAAGTGGTTGAGTTGGAATAGTGGCAACTACCTTGCTTTCTGGTCAGTTTTAATTTTTGTATCAAGGGAGCTAATCATCATTGTGAGGTGGGTCTGGTTATGTATAATGACAACTCCGACCTAGGGTCGAACGTCCAATATATCCATTGGACAAGAGATGTGGATTATTTTTTAGGTATCCTATCATGTTTAGTTTTCAAAGGGGATAGTTTAAATCAAAATACCATGGTAGAAGGCCTAGCATCGGCTCTAACGTTGTTTCCAAGGCCGTCTAATAAAATGACAGCACAAGAATACTATGATGGAGAAAGGCATTGCATTCTTATAACAGCTAGAGATCCTATTCCTAAGAGAATGCTAGTCTCGGTGCCTGAGATTCAAGGAAGATTTATTGGCACAAAATTACATACTTTAAAGGCAGATTTTTACGAAGTGGCTAAAATGTTTGGTTCGCTAGCAGTATCCCTTTCAATAATTTCACCAATCCAACATCCAATTTTTGGAGTGATATTCAATATGGGGAATAATGATTCTTCACTAGCCAACACTCCCATCTCTGATTGCAGAAACGAACAATTTATTGTGTTATTATCAAGAAATTTTAGGGAGGCACATTATGCCCTTCATGAGAAAAGAACAATGGATCCACCCACAAAAGAAAGTGTAGAATCACTTAAGACAACAAATGATATTATACTTGCCATAGATTTTGCTGACGACCATGAAGAAGATCTATTCTCAATTATGATGACTGGGAAGCAAATCATTGAAGCTGACAAAGATGACCGACTTGTACATGATCCTATAAGCCTACTGCCCCTATCTGTCCCGAATGCCTCAACCGGTGAAGTTGGCATTTCAACTCTACCAATGGTAATATCCACAACACCAACTTTCATAGTTGGAGAAGGGTCTTTGAAAGGTGTAGTTGGAGGCAACTCGGGAAACTGCTCAACAAGCACAGCAATTGCTGTAGGCATGGCTGATCCAAGGGATGCTCCACCAGCTCAAAATTCCATGCTCCCTCATTCAATTGGAAATACATTCGATGTTCAACCATACTCATCACTATCAATGCTTCCTTATGCTAGTTCTAGTAGCAGAAGTCGCCCATATCTTCCATTCCAGGTGATTGGGTTTGGTCCACTTGGTAGAATTGCTTTTGGAACAAGCACCGGGGTTCCTCCTGCACCAATAACACCTCAATTTAATCCTTATGATTTTTGGCCTCCCCCATCATCTCTTACAAATTTTAATGACTATTTGCTGGAATGGGAGGGATCTTTGGCTGGAAAAATTGTCAAGAAGAATCGTCAATTACATCTTTGGGTAAAGGTTCTGAGGAAAGCAACATCGCCCTTGACGCTTACTATTGAGTGGCCAAGTAGGCTAGAGATAGCCCTATATTTACCACAGAAAGCTGTTAATCATACAGTAAAGATTTGTCGTGGTCCCGTTGATTACGTGTTCTTGTATTTAAAGCAATTTGACAATCTCGACTTGCATGACCATCTGAACAACAAGAACCTGAGTGCGAAAATTCATCTCCCTTCTCAAATTTTGATGTTAACTCCAACCAAAAGTAAACACCACTTCATAGGAATAGTCTTCCCTGGGGATACCATATTTATTGAACTTCTCTAAGTATGCATACGACTATCAAGAGTATCAAGAGAAGCCAAAAGAACAAGTTGGAGGACCTGTTGTGGCAGCTAGAATTGCATTAAGAGAAGAGACCACCATGAGATCATGCTCCCAAACTTTTCGAAGGGTGAAGTTGGGATAATTAAAAGTATATCATCAATGATATGGCAGCTAGATATTTCTTTAAGAATTGAACATGACTTTATCTTTTATTGTTTGAGTTTGTTAAATATATATATAAAGGCCAAATAGTCAATGAGTGACACCTGTAATTTAGTAGCAACTTAGTCACTTGCTGATAGCTTTATCTTTTATTAGTTTTTCTGTTTTAAATCTTCCCATTCTATAAATGTAAACGTTATTGATCAATAAATTATTAAAACTCCCTTTTCCTTCTCC

Coding sequences of Glyma.20g031800

Limit To All Plant Sequences

>Glyma.20g031800.1 sequence-type=CDS polypeptide=Glyma.20g031800.1.p locus=Glyma.20g031800 ID=Glyma.20g031800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGACCAAGAAGTGGTTAAACTTAATCATAGATGGCAACTCGACCTTGGGTCCTTATTGGCCAAAAATTGTTTCAGAATATCTCGAAAAGATTGTTAGGACCTTCATTGACAACTCAAGAGAAGAGGGAGCTAATCATCATTGTGAGGTGGGTCTGGTTATGTATAATGACAACTCCGACCTAGGGTCGAACGTCCAATATATCCATTGGACAAGAGATGTGGATTATTTTTTAGGTATCCTATCATGTTTAGTTTTCAAAGGGGATAGTTTAAATCAAAATACCATGGTAGAAGGCCTAGCATCGGCTCTAACGTTGTTTCCAAGGCCGTCTAATAAAATGACAGCACAAGAATACTATGATGGAGAAAGGCATTGCATTCTTATAACAGCTAGAGATCCTATTCCTAAGAGAATGCTAGTCTCGGTGCCTGAGATTCAAGGAAGATTTATTGGCACAAAATTACATACTTTAAAGGCAGATTTTTACGAAGTGGCTAAAATGTTTGGTTCGCTAGCAGTATCCCTTTCAATAATTTCACCAATCCAACATCCAATTTTTGGAGTGATATTCAATATGGGGAATAATGATTCTTCACTAGCCAACACTCCCATCTCTGATTGCAGAAACGAACAATTTATTGTGTTATTATCAAGAAATTTTAGGGAGGCACATTATGCCCTTCATGAGAAAAGAACAATGGATCCACCCACAAAAGAAAGTGTAGAATCACTTAAGACAACAAATGATATTATACTTGCCATAGATTTTGCTGACGACCATGAAGAAGATCTATTCTCAATTATGATGACTGGGAAGCAAATCATTGAAGCTGACAAAGATGACCGACTTGTACATGATCCTATAAGCCTACTGCCCCTATCTGTCCCGAATGCCTCAACCGGTGAAGTTGGCATTTCAACTCTACCAATGGTAATATCCACAACACCAACTTTCATAGTTGGAGAAGGGTCTTTGAAAGGTGTAGTTGGAGGCAACTCGGGAAACTGCTCAACAAGCACAGCAATTGCTGTAGGCATGGCTGATCCAAGGGATGCTCCACCAGCTCAAAATTCCATGCTCCCTCATTCAATTGGAAATACATTCGATGTTCAACCATACTCATCACTATCAATGCTTCCTTATGCTAGTTCTAGTAGCAGAAGTCGCCCATATCTTCCATTCCAGGTGATTGGGTTTGGTCCACTTGGTAGAATTGCTTTTGGAACAAGCACCGGGGTTCCTCCTGCACCAATAACACCTCAATTTAATCCTTATGATTTTTGGCCTCCCCCATCATCTCTTACAAATTTTAATGACTATTTGCTGGAATGGGAGGGATCTTTGGCTGGAAAAATTGTCAAGAAGAATCGTCAATTACATCTTTGGGTAAAGGTTCTGAGGAAAGCAACATCGCCCTTGACGCTTACTATTGAGTGGCCAAGTAGGCTAGAGATAGCCCTATATTTACCACAGAAAGCTGTTAATCATACAGTAAAGATTTGTCGTGGTCCCGTTGATTACGTGTTCTTGTATTTAAAGCAATTTGACAATCTCGACTTGCATGACCATCTGAACAACAAGAACCTGAGTGCGAAAATTCATCTCCCTTCTCAAATTTTGATGTTAACTCCAACCAAAAGTAAACACCACTTCATAGGAATAGTCTTCCCTGGGGATACCATATTTATTGAACTTCTCTAA

>Glyma.20g031800.2 sequence-type=CDS polypeptide=Glyma.20g031800.2.p locus=Glyma.20g031800 ID=Glyma.20g031800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATAATGACAACTCCGACCTAGGGTCGAACGTCCAATATATCCATTGGACAAGAGATGTGGATTATTTTTTAGGTATCCTATCATGTTTAGTTTTCAAAGGGGATAGTTTAAATCAAAATACCATGGTAGAAGGCCTAGCATCGGCTCTAACGTTGTTTCCAAGGCCGTCTAATAAAATGACAGCACAAGAATACTATGATGGAGAAAGGCATTGCATTCTTATAACAGCTAGAGATCCTATTCCTAAGAGAATGCTAGTCTCGGTGCCTGAGATTCAAGGAAGATTTATTGGCACAAAATTACATACTTTAAAGGCAGATTTTTACGAAGTGGCTAAAATGTTTGGTTCGCTAGCAGTATCCCTTTCAATAATTTCACCAATCCAACATCCAATTTTTGGAGTGATATTCAATATGGGGAATAATGATTCTTCACTAGCCAACACTCCCATCTCTGATTGCAGAAACGAACAATTTATTGTGTTATTATCAAGAAATTTTAGGGAGGCACATTATGCCCTTCATGAGAAAAGAACAATGGATCCACCCACAAAAGAAAGTGTAGAATCACTTAAGACAACAAATGATATTATACTTGCCATAGATTTTGCTGACGACCATGAAGAAGATCTATTCTCAATTATGATGACTGGGAAGCAAATCATTGAAGCTGACAAAGATGACCGACTTGTACATGATCCTATAAGCCTACTGCCCCTATCTGTCCCGAATGCCTCAACCGGTGAAGTTGGCATTTCAACTCTACCAATGGTAATATCCACAACACCAACTTTCATAGTTGGAGAAGGGTCTTTGAAAGGTGTAGTTGGAGGCAACTCGGGAAACTGCTCAACAAGCACAGCAATTGCTGTAGGCATGGCTGATCCAAGGGATGCTCCACCAGCTCAAAATTCCATGCTCCCTCATTCAATTGGAAATACATTCGATGTTCAACCATACTCATCACTATCAATGCTTCCTTATGCTAGTTCTAGTAGCAGAAGTCGCCCATATCTTCCATTCCAGGTGATTGGGTTTGGTCCACTTGGTAGAATTGCTTTTGGAACAAGCACCGGGGTTCCTCCTGCACCAATAACACCTCAATTTAATCCTTATGATTTTTGGCCTCCCCCATCATCTCTTACAAATTTTAATGACTATTTGCTGGAATGGGAGGGATCTTTGGCTGGAAAAATTGTCAAGAAGAATCGTCAATTACATCTTTGGGTAAAGGTTCTGAGGAAAGCAACATCGCCCTTGACGCTTACTATTGAGTGGCCAAGTAGGCTAGAGATAGCCCTATATTTACCACAGAAAGCTGTTAATCATACAGTAAAGATTTGTCGTGGTCCCGTTGATTACGTGTTCTTGTATTTAAAGCAATTTGACAATCTCGACTTGCATGACCATCTGAACAACAAGAACCTGAGTGCGAAAATTCATCTCCCTTCTCAAATTTTGATGTTAACTCCAACCAAAAGTAAACACCACTTCATAGGAATAGTCTTCCCTGGGGATACCATATTTATTGAACTTCTCTAA

Predicted protein sequences of Glyma.20g031800

Limit To All Plant Sequences

>Glyma.20g031800.1.p sequence-type=predicted peptide transcript=Glyma.20g031800.1 locus=Glyma.20g031800 ID=Glyma.20g031800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTKKWLNLIIDGNSTLGPYWPKIVSEYLEKIVRTFIDNSREEGANHHCEVGLVMYNDNSDLGSNVQYIHWTRDVDYFLGILSCLVFKGDSLNQNTMVEGLASALTLFPRPSNKMTAQEYYDGERHCILITARDPIPKRMLVSVPEIQGRFIGTKLHTLKADFYEVAKMFGSLAVSLSIISPIQHPIFGVIFNMGNNDSSLANTPISDCRNEQFIVLLSRNFREAHYALHEKRTMDPPTKESVESLKTTNDIILAIDFADDHEEDLFSIMMTGKQIIEADKDDRLVHDPISLLPLSVPNASTGEVGISTLPMVISTTPTFIVGEGSLKGVVGGNSGNCSTSTAIAVGMADPRDAPPAQNSMLPHSIGNTFDVQPYSSLSMLPYASSSSRSRPYLPFQVIGFGPLGRIAFGTSTGVPPAPITPQFNPYDFWPPPSSLTNFNDYLLEWEGSLAGKIVKKNRQLHLWVKVLRKATSPLTLTIEWPSRLEIALYLPQKAVNHTVKICRGPVDYVFLYLKQFDNLDLHDHLNNKNLSAKIHLPSQILMLTPTKSKHHFIGIVFPGDTIFIELL*

>Glyma.20g031800.2.p sequence-type=predicted peptide transcript=Glyma.20g031800.2 locus=Glyma.20g031800 ID=Glyma.20g031800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYNDNSDLGSNVQYIHWTRDVDYFLGILSCLVFKGDSLNQNTMVEGLASALTLFPRPSNKMTAQEYYDGERHCILITARDPIPKRMLVSVPEIQGRFIGTKLHTLKADFYEVAKMFGSLAVSLSIISPIQHPIFGVIFNMGNNDSSLANTPISDCRNEQFIVLLSRNFREAHYALHEKRTMDPPTKESVESLKTTNDIILAIDFADDHEEDLFSIMMTGKQIIEADKDDRLVHDPISLLPLSVPNASTGEVGISTLPMVISTTPTFIVGEGSLKGVVGGNSGNCSTSTAIAVGMADPRDAPPAQNSMLPHSIGNTFDVQPYSSLSMLPYASSSSRSRPYLPFQVIGFGPLGRIAFGTSTGVPPAPITPQFNPYDFWPPPSSLTNFNDYLLEWEGSLAGKIVKKNRQLHLWVKVLRKATSPLTLTIEWPSRLEIALYLPQKAVNHTVKICRGPVDYVFLYLKQFDNLDLHDHLNNKNLSAKIHLPSQILMLTPTKSKHHFIGIVFPGDTIFIELL*

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