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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59960.1 | AT | NAD(P)-linked oxidoreductase superfamily protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| KOG1577 | KOG | Aldo/keto reductase family proteins | JGI | N/A | IEA |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | N/A | IEA |
| PTHR11732:SF34 | Panther | ALDO-KETO REDUCTASE | JGI | N/A | IEA |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | N/A | IEA |
| PWY1F-FLAVSYN | SoyCyc9 | flavonoid biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-48148 | SoyCyc9-rxn | 6'-deoxychalcone synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CHR4 | chalcone reductase CHR4 |
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Glyma.20g031100 not represented in the dataset |
Glyma.20g031100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g03900 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g031100.1 sequence-type=CDS polypeptide=Glyma.20g031100.1.p locus=Glyma.20g031100 ID=Glyma.20g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTGCAACAAACGTCCCCAAAGTGCTGTTACAACTACAACCACCCTCCAAATCGAACCCACTCTGCGTGCCGGTGATAGGACTCGGCACCGCCGCGGTCCACAACGACGGTGACACGGTGAAGGCTGCAGTCATAGAGGCTATCAAACTCGGTTACAGACACTTCGACACCGCGGCACAGTACGGATCGGAGCAGGCTCTTGGAGAAGCCATTGCCGAAGCACTTCGTGTTGGTCTCATAGCCTCAAGAGACGAGCTTTTCATCACTTCCAAGTTATGGTGTTGTGATAATCATCCCCATCTTGTTCTTCCTGCTCTACAAAATTCGCTTCGGTCTCTTAAATTAGATTATTTGGACCTATATTTAATTCATTGGCCAATTACTGCAAAGCCTGGAATGTGGGAGATGCCTTATTCTGAAGAGAGCCTTGTTCCATTTGACTTAAAGAGTGTGTGGGCAGCAATGGAAGAATGTCACAAACTTGGCCTTACCAAATCAATTGGAGTTAGCAACTTCTCTTGCAAGAAACTTGAAAATCTTCTCTCTTTTGCTACAATTCCTCCTTCTGTCAATCAAGTGGAGATGAATATTGCCTGGCAGCAAAAGAATCTTAGAGCATACTGCAAGGCAAAGGGTATAATTGTGACTGCCTACTCTCCTTTGGGAGCCAAAGGGAGCAAATGGGATATCAATCAAATTTTGGACAATGAATTGACCAAGCAGATTGCACAGGCTCATGGCAAAACTGCAGCTCAGGTATGTCTTAGATGGTTATTTGAGCAAGGTGTGACTTTCATACCAAAGAGCTACAATAAAGAGAGATTAAAGGAAAATTTAGAGATATTTGATTGGTCACTCACCAAAGATGACCATGAAAAGATTAATCAAGTCAAACAGGAGCGTATGTTCAAGTACGGAACAGCAGCATTCCCGCTTCCTGATCTATTTGATGGGGAAACTTAG
>Glyma.20g031100.1.p sequence-type=predicted peptide transcript=Glyma.20g031100.1 locus=Glyma.20g031100 ID=Glyma.20g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSATNVPKVLLQLQPPSKSNPLCVPVIGLGTAAVHNDGDTVKAAVIEAIKLGYRHFDTAAQYGSEQALGEAIAEALRVGLIASRDELFITSKLWCCDNHPHLVLPALQNSLRSLKLDYLDLYLIHWPITAKPGMWEMPYSEESLVPFDLKSVWAAMEECHKLGLTKSIGVSNFSCKKLENLLSFATIPPSVNQVEMNIAWQQKNLRAYCKAKGIIVTAYSPLGAKGSKWDINQILDNELTKQIAQAHGKTAAQVCLRWLFEQGVTFIPKSYNKERLKENLEIFDWSLTKDDHEKINQVKQERMFKYGTAAFPLPDLFDGET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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