SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11270.1 | AT | Mov34/MPN/PAD-1 family protein | JGI | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | JGI | N/A | IEA |
| GO:0043161 | GO-bp | proteasome-mediated ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0000502 | GO-cc | proteasome complex | EnsemblGenomes | N/A | IEA |
| GO:0005838 | GO-cc | proteasome regulatory particle | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| PTHR10540 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | JGI | N/A | IEA |
| PTHR10540:SF7 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 | JGI | N/A | IEA |
| PF00069 | PFAM | Protein kinase domain | JGI | N/A | IEA |
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Glyma.20g026100 not represented in the dataset |
Glyma.20g026100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g03160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g026100.1 sequence-type=CDS polypeptide=Glyma.20g026100.1.p locus=Glyma.20g026100 ID=Glyma.20g026100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTTTTTCTTTTTGGTTTACAACAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGTTGCGTGAAAATGACTTTGACACTCATGGGTTATTTAATGTCTATGTTCCAAATCCTGTCTTGGTTATAATTGATGTTGAACCTAAGGAATTAGGAATCCCAAGAAAAACATATTATGTCGTTGAAGAGGTTAAAGAGTATTCCAAGAAACTGACATATAGTTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATATTAGTGGAACACTTGCTTAGATATGTGAAGGATACAACCATTAGCATCCTTGTGACAAAGGTAAGTGCAAACCTCACAACCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATCAGGGGTTTCTTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAAGACGTGTTTAACCTGTTACCAAATCTCAATGTTGTTGATCTTTTATCAAGGCTTTGGTATAGGGCTCCAGAACTTCTTTTGGGTTCAACTGATTATGGATTCAACATTGATCTCTGTAGTGCAGGATGCCTATTGGCTGAGATGCTTGTTGGAAGACCAATTATGCCTGGCAGGACAGGGCTTGAGCAGATTCACATGATCTTCAAACTTTGTGGTTCTTCTTCAGAGGATTATTTTAAAAAACTGAAGCTAACAAGTTATCAGCCTCCAAACCATTACAAACTAAGTTTCGAAGAAAACTTTTAG
>Glyma.20g026100.1.p sequence-type=predicted peptide transcript=Glyma.20g026100.1 locus=Glyma.20g026100 ID=Glyma.20g026100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGFSFWFTTKEHVVGWYSTGPKLRENDFDTHGLFNVYVPNPVLVIIDVEPKELGIPRKTYYVVEEVKEYSKKLTYSLFCVHNATQKSQKVFIHVPSEIATNEVEEILVEHLLRYVKDTTISILVTKVSANLTTLKGLDARLKEIRGFFDLVIDGKLPLNHEILYHLQDVFNLLPNLNVVDLLSRLWYRAPELLLGSTDYGFNIDLCSAGCLLAEMLVGRPIMPGRTGLEQIHMIFKLCGSSSEDYFKKLKLTSYQPPNHYKLSFEENF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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