SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g025900

Feature Type:gene_model
Chromosome:Gm20
Start:2845106
stop:2852380
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g025900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26480.1AT general regulatory factor 12 JGI N/AIEA
GO:0019904GO-mf protein domain specific binding EnsemblGenomesN/AIEA
KOG0841 KOG Multifunctional chaperone (14-3-3 family) JGI N/AIEA
PTHR18860Panther 14-3-3 PROTEIN JGI N/AIEA
PF00244PFAM 14-3-3 protein JGI N/AIEA

Proteins Associated with Glyma.20g025900
LocusGene SymbolProtein Name
SGF14R putative 14-3-3 protein SGF14r
GF14u GF14 gene family gene u

Expression Patterns of Glyma.20g025900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g025900
ParalogEvidenceComments
Glyma.07g226000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g025900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g03120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g025900
>Glyma.20g025900.1 sequence-type=CDS polypeptide=Glyma.20g025900.1.p locus=Glyma.20g025900 ID=Glyma.20g025900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCACAGAGAAGGAGAGAGAGACCCAAGTTTACTTGGCCAAGCTCTCTGAGCAAGCCGAGAGATATGAAGAGATGGTTGAATGCATGAAGACAATTGCAAAACTTGATCTAGAACTAACTGTTGAAGAGAGGAACCTGCTCTCAGTGGGATATAAGAATGTGATTGGTGCAAGAAGAGCCTCTTGGCGCATTATGTCATCAATTGAACAAAAGGAAGAGTCTAAAGGAAATGAAAGCAATGCAAAACTGATAAAGAATTATCGTCAAAAGGTTGAAGAGGAACTCTCAAAGATTTGCAGTGACATTCTCAGCATTATTGACCAGCATCTTGTTCCTTCTTCCACCTCAGGAGAAGCCACCGTTTTCTACTATAAGATGAAAGGTGACTATTATCGATATTTAGCCGAGTTCAAGACCGATCAGGATAGAAAGGAGGCTGCTGAGCAATCACTAAAGGGATATGAGGCTGCTTTAGCTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACTCTCCTGAAAGGGCCTGTCATTTGGCTAAGCAAGCTTTCGATGAGGCAATTGCAGAGTTAGACACCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGCTGCTGAGAGACAATCTCACTCTCTGGACCTCTGATTTACCTGAGGATGGAGGTGACGAAATTAAAACAGAAGAAGCCAAACCTGCTGAAACTTCTGAGCACTCATAG
Predicted protein sequences of Glyma.20g025900
>Glyma.20g025900.1.p sequence-type=predicted peptide transcript=Glyma.20g025900.1 locus=Glyma.20g025900 ID=Glyma.20g025900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTEKERETQVYLAKLSEQAERYEEMVECMKTIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNAKLIKNYRQKVEEELSKICSDILSIIDQHLVPSSTSGEATVFYYKMKGDYYRYLAEFKTDQDRKEAAEQSLKGYEAALATASTELPSTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDEIKTEEAKPAETSEHS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo