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Report for Sequence Feature Glyma.20g019800

Feature Type:gene_model
Chromosome:Gm20
Start:2051817
stop:2057262
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g019800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49350.1AT pfkB-like carbohydrate kinase family protein JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor EnsemblGenomesN/AIEA
KOG2855 KOG Ribokinase JGI N/AIEA
PTHR10584Panther SUGAR KINASE JGI N/AIEA
PTHR10584:SF15Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00294PFAM pfkB family carbohydrate kinase JGI N/AIEA
PWY-6019SoyCyc9 pseudouridine degradation Plant Metabolic Network ISS
GN7V-65561SoyCyc9-rxn pseudouridine kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g019800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g019800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g02420 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g019800
>Glyma.20g019800.2 sequence-type=transcript locus=Glyma.20g019800 ID=Glyma.20g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAGAGTCTCTCAAAGGGTTATTTCCTGCTTCTCTCTCATCTATTGACTCATCCATTACCTGAACAAACACCTAGGATTTTGTCCTGTTCCCTTCATTTCATTTTCATTGGATTTATATAGCATTGCAACGATCGGATAGCTATTTGCTACTTGATTGATTCTTTGCCAGCGTGGGATTTGAGAAAGAAAAAAAAAACAGTAACAGGAAAGGAGGGTAGCATTAAGGGAAGAACTCAGGTTGCGGGAAGAGGTAAAAAAAATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAAATTTTGAATGAGGATGACTGGTAGATAAACAGCTTGAGTTGCGATACAACCACCACCTTTGCCCAGAAAAAATGATAACATCTTACAAAGGCTTGTGGCATTGAAATATGAATTAATAACTATATTTTTTTAGTTTTTATTTCATATTTTTCTATAAGAGTTTAATTGATACACTTTTTTTTAAACATTGATATGCACTTTTGCACTAACATGTTATACTTGATCATGTCATGATGTCGGTCTTTGTAGTGAATATTTTTCCCCCTAGAATCTATATTTTTACACATTTATATAGCATCA
Coding sequences of Glyma.20g019800
>Glyma.20g019800.1 sequence-type=CDS polypeptide=Glyma.20g019800.1.p locus=Glyma.20g019800 ID=Glyma.20g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGATGATGCTAAATCTGTTTACTCAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAA

>Glyma.20g019800.2 sequence-type=CDS polypeptide=Glyma.20g019800.2.p locus=Glyma.20g019800 ID=Glyma.20g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCATGGGGATGGAGAAGCGGTGATAATTGGGGGTATGGTATTGGACATTCATGCTACACCTTCAATGCTAGCAAATCCTGGAACCACTACCCCTGGCAAGGTCTATTATGTCCAAGGAGGTGTGGCAAGGAATGTAGCCGAGTGCATGTCAAAACTAGGAGCAAAGCCATACATGATTAGTGCTCTTGGGTTTGACATGGCAGGAAATCTGCTGTTGAATCAGTGGAAATCTGCTGGCCTATCTATAGAAGGTATTTTGAAGGATAAAGATATTGAGACTCCAGTAGTATGCAATATATTTGATGTTAATGGTGAGGTAGCAGCTGGTGTTGCTAGTGTGGAAGCTTTTGAAAAATATCTGACACCTGACTGGATCTTTCGCTTCAAAAACACTTTACTATCTGCTCCAGTGTTAATGGTTGATGCAAATCTGAGTCATCCTTCTCTTGAAGCTGCTTGTAAAATGGCGATTGACATGGAGTGTCCTGTATGGTTTGAGCCAGTATCAGTTACTAAATCCCGAAGAATCAGTTCTATTGTCGAGTATGTAACTTTTGCTTCTCCAAATGAAGATGAACTTATTGCGATGGCGAATGCTTTATCTGGCAGTGATGAGTTTCATCCACTTAAAGAAAGTCAGAAGAAAAATATTTCAGTATTATCTTTGTTTCAAATGCTGAAACCAGCAATATGGGTTTTGCTAGAAAAAGGCATTAAAGTGGTCCTAGTGACCTTTGGCTCTAATGGAGTGTTTTTATGCAATAAAGGATGGCCTAGACAATTTAAAATGCCTGCAGAGAAAACAAATCAGTGTGGCTTCAGAGGACAATTATTCAAGACTGTTATGCAAAAATGTCCACCTAGTCGTTATTCTGGTTTTTCAGAACTTGATAGAAGCTCTCATCTCTTTGCTGTGCATTTTCCCTCTCTTCCTGCATCAGTTGTGAGGCTTACTGGCGCTGGTGATTGCTTAGTTGGTGGAACACTCACATCAATTTGTGCAGGATTAGATATTATGCAAAGTGTGTCTGTTGGCATTGCAGTGGCTAAAGCTGTAGTGGAGGTTGAGGCTAATGTCCCATCTACTTTCAGTTTATCTGCTATCACAGGTGCTAAAGTTCTCTTCCCCCAATCGATGTTGTAA
Predicted protein sequences of Glyma.20g019800
>Glyma.20g019800.1.p sequence-type=predicted peptide transcript=Glyma.20g019800.1 locus=Glyma.20g019800 ID=Glyma.20g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEHGDGEAVIIGGMVLDIHATPSMLANPGTTTPGKVYYVQGGVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEAFEKYLTPDWIFRFKNTLLSAPVLMVDANLSHPSLEAACKMAIDMECPVWFEPVSVTKSRRISSIVEYVTFASPNEDELIAMANALSGSDEFHPLKESQKKNISVLSLFQMLKPAIWVLLEKGIKVVLVTFGSNGVFLCNKGWPRQFKMPAEKTNQCGFRGQLFKTVMQKCPPSRYSGFSELDRSSHLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITDDAKSVYSGAKVLFPQSML*

>Glyma.20g019800.2.p sequence-type=predicted peptide transcript=Glyma.20g019800.2 locus=Glyma.20g019800 ID=Glyma.20g019800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEHGDGEAVIIGGMVLDIHATPSMLANPGTTTPGKVYYVQGGVARNVAECMSKLGAKPYMISALGFDMAGNLLLNQWKSAGLSIEGILKDKDIETPVVCNIFDVNGEVAAGVASVEAFEKYLTPDWIFRFKNTLLSAPVLMVDANLSHPSLEAACKMAIDMECPVWFEPVSVTKSRRISSIVEYVTFASPNEDELIAMANALSGSDEFHPLKESQKKNISVLSLFQMLKPAIWVLLEKGIKVVLVTFGSNGVFLCNKGWPRQFKMPAEKTNQCGFRGQLFKTVMQKCPPSRYSGFSELDRSSHLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITGAKVLFPQSML*






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