Glyma.20g018300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.20g018300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.20g018300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.20g018300

Feature Type:	gene_model
Chromosome:	Gm20
Start:	1900149
stop:	1904303
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g018300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08480.1	AT		JGI	N/A	IEA
GO:0005749	GO-cc	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	EnsemblGenomes	N/A	IEA
GO:0045273	GO-cc	respiratory chain complex II	EnsemblGenomes	N/A	IEA
PWY-3781	SoyCyc9	aerobic respiration I (cytochrome c)	Plant Metabolic Network		ISS
PWY-4302	SoyCyc9	aerobic respiration III (alternative oxidase pathway)	Plant Metabolic Network		ISS
PWY-5464	SoyCyc9	superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle	Plant Metabolic Network		ISS
PWY-561	SoyCyc9	superpathway of glyoxylate cycle and fatty acid degradation	Plant Metabolic Network		ISS
PWY-5690	SoyCyc9	TCA cycle II (plants and fungi)	Plant Metabolic Network		ISS
GN7V-67622	SoyCyc9-rxn	succinate:quinone oxidoreductase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.20g018300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g018300 not represented in the dataset	Glyma.20g018300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.20g018300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g02250	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g018300

Limit To All Plant Sequences

>Glyma.20g018300.2 sequence-type=transcript locus=Glyma.20g018300 ID=Glyma.20g018300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTTTTTGTTTTTCGGAAGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGA

>Glyma.20g018300.3 sequence-type=transcript locus=Glyma.20g018300 ID=Glyma.20g018300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGA

>Glyma.20g018300.4 sequence-type=transcript locus=Glyma.20g018300 ID=Glyma.20g018300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGGTAACACACGcttcttcttcttcttcttcttcttcttcAAATTGAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGA

>Glyma.20g018300.5 sequence-type=transcript locus=Glyma.20g018300 ID=Glyma.20g018300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCTTAAATGGGCATTGTTGTCTGAGTGTCGAGACTCGAGAGTTTTCAAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAAAACTGTTGGCTTATGGGAATTAATGCTACATTTGTTATCGTTTCTGAAAAATGAAGAATAATTTTTGGTGTTGGCAGTGCGATTTATGCTCACTGAATAAGTATGTTGTGAATTAGGTTATGTTTTAAAACTAATGCATCATCGCAAAACAAATGGTGACTTGTGCCATTTTTTCTCTGTATTGTTGTGCTGTTGTTTATTAGTCTGGGACCAATGGTTGAGAGAGGTCATAAGTGCTGGCATTTTCATATTGTTCCACCGCTAATACAATCGAGACAACATACTTTTTCTGCTTGCATTAGTCATAAGTAAAAATACGA

Coding sequences of Glyma.20g018300

Limit To All Plant Sequences

>Glyma.20g018300.1 sequence-type=CDS polypeptide=Glyma.20g018300.1.p locus=Glyma.20g018300 ID=Glyma.20g018300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma.20g018300.2 sequence-type=CDS polypeptide=Glyma.20g018300.2.p locus=Glyma.20g018300 ID=Glyma.20g018300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma.20g018300.3 sequence-type=CDS polypeptide=Glyma.20g018300.3.p locus=Glyma.20g018300 ID=Glyma.20g018300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma.20g018300.4 sequence-type=CDS polypeptide=Glyma.20g018300.4.p locus=Glyma.20g018300 ID=Glyma.20g018300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

>Glyma.20g018300.5 sequence-type=CDS polypeptide=Glyma.20g018300.5.p locus=Glyma.20g018300 ID=Glyma.20g018300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAGCAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGCATGAAATCGCAAATCACACACTTCAACTTTACAGGGTAGACACATTGGCTGCTGAGGCCAAGTTTCTGGACTGGTGGAATAAGAAGACTGGAGGGTATTAA

Predicted protein sequences of Glyma.20g018300

Limit To All Plant Sequences

>Glyma.20g018300.1.p sequence-type=predicted peptide transcript=Glyma.20g018300.1 locus=Glyma.20g018300 ID=Glyma.20g018300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma.20g018300.2.p sequence-type=predicted peptide transcript=Glyma.20g018300.2 locus=Glyma.20g018300 ID=Glyma.20g018300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma.20g018300.3.p sequence-type=predicted peptide transcript=Glyma.20g018300.3 locus=Glyma.20g018300 ID=Glyma.20g018300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma.20g018300.4.p sequence-type=predicted peptide transcript=Glyma.20g018300.4 locus=Glyma.20g018300 ID=Glyma.20g018300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

>Glyma.20g018300.5.p sequence-type=predicted peptide transcript=Glyma.20g018300.5 locus=Glyma.20g018300 ID=Glyma.20g018300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNTQSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAVQFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLAAEAKFLDWWNKKTGGY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain