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Report for Sequence Feature Glyma.20g015700

Feature Type:gene_model
Chromosome:Gm20
Start:1411768
stop:1413076
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g015700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15920.1AT Nodulin MtN3 family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008643GO-bp carbohydrate transport EnsemblGenomesN/AIEA
GO:0034219GO-bp carbohydrate transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0051119GO-mf sugar transmembrane transporter activity EnsemblGenomesN/AIEA
PTHR10791Panther RAG1-ACTIVATING PROTEIN 1 JGI N/AIEA
PF00722PFAM Glycosyl hydrolases family 16 JGI N/AIEA
PF03083PFAM Sugar efflux transporter for intercellular exchange JGI N/AIEA

Expression Patterns of Glyma.20g015700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g015700 not represented in the dataset
Glyma.20g015700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g015700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g01895 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g015700
>Glyma.20g015700.1 sequence-type=CDS polypeptide=Glyma.20g015700.1.p locus=Glyma.20g015700 ID=Glyma.20g015700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGAGATGCGGTGCAAGTCATATCTGGACGAGAAAGGGGTCCTTTTCTTTGTGGAGTTGTTTGTGCTGCTACCACACACAAAGGTCATTTCAATAACTATAGTAATTCCATTTTCTGCGGTGCAGTTGTCATCCCAAGGGCCAACACATGATGAGATTGATTTCGAGTTTTTGCGAAACCTAAGTGGAGACCCTTATATTCTCCGCACAAACATCTTCACCCAAGGCAAAGGATGCAGACCTACGTTTTGGAAAATAAAGAAGCACGAATCTACGGAAGATTTCTCGAGCCTTCCTTACATTTGCACATTGCTTAATTGCTCCTTATGGACTTACTATGGAATCATAAAGGCTAGAGAGTATCTCGTGGCTACTGTCAATGGCTTTGGCATTGTGGTGGAGACAATCTATGTTATTCTATTTCTCATATATGCTCCAAAAGGGATAAGGGGTAGGACTGCCATTTTGGCTGTGATTTTGGATGTCGCAATTTCGGCAGAAGCAGTAACTACTTCTCAATTAGCATTGCAAGGAGAAGCTCATGGTGGTGCTGTTGGTGTTATGGGAGCAGGCTAA
Predicted protein sequences of Glyma.20g015700
>Glyma.20g015700.1.p sequence-type=predicted peptide transcript=Glyma.20g015700.1 locus=Glyma.20g015700 ID=Glyma.20g015700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQEMRCKSYLDEKGVLFFVELFVLLPHTKVISITIVIPFSAVQLSSQGPTHDEIDFEFLRNLSGDPYILRTNIFTQGKGCRPTFWKIKKHESTEDFSSLPYICTLLNCSLWTYYGIIKAREYLVATVNGFGIVVETIYVILFLIYAPKGIRGRTAILAVILDVAISAEAVTTSQLALQGEAHGGAVGVMGAG*






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