SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17790.1 | AT | purple acid phosphatase 17 | JGI | N/A | IEA |
| GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0003993 | GO-mf | acid phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG2679 | KOG | Purple (tartrate-resistant) acid phosphatase | JGI | N/A | IEA |
| PTHR10161 | Panther | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 | JGI | N/A | IEA |
| PF00149 | PFAM | Calcineurin-like phosphoesterase | JGI | N/A | IEA |
| PWY-6348 | SoyCyc9 | phosphate acquisition | Plant Metabolic Network | ISS | |
| GN7V-46876 | SoyCyc9-rxn | peroxidase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PAP17 | purple acid phosphatase 17-like |
|
Glyma.20g011900 not represented in the dataset |
Glyma.20g011900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g01470 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g011900.1 sequence-type=CDS polypeptide=Glyma.20g011900.1.p locus=Glyma.20g011900 ID=Glyma.20g011900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCCCCATCATCTCCCCTTCATTCAGCAGCAATTTTATGCATATATTTTGTGCTACCCGCTTTTGCAGAGCTTCAGAGGTTCCAACATCAACCAAAACATGATGGATCCCTCAACTTTCTAGTCATTGGAGATTGGGGTAGAAAAGGGCATTATAATCAATCCCTTGTAGCCACACAGATGGGAAAGATGGGAGACAAACTTGATTTAGATTTTGTTGTATCAACTGGAGACAATTTCTACAATAGTGGGTTAAAAGGTGTAAATGATCCATTATTTCTGCAGTCATTTTCCAACATTTACACTGCTAAGAGCCTTAGGAAGCAATGGTACTCTGTTTTGGGAAACCATGACTATAGGGGTAATGCACTGGCACAGTTAAGTCCACTCTTGAGGAAGATTGACAGGAGATGGTTTTGCCAGAGATCATTTATTCTTAATGCAGGAGTTGCTGAATTTTTCTTCATAGACACAACCCCGTTTATGAGAAAATATTTCAACAATTCGAATCGTCACTATGATTGGCGAGGCGTGCTTCCGAGGCAAAAATACCTCAAAACCCTTCTGAAGGATCTTGAGGAAGAATTGAGGAAATCAACTGCAAGATGGAAAATCGCTGTGGGTCACCATGCAATAAGAAGTATTGGCCATCACGGTGATAGTCCAGAACTTGTAAAGCACCTTGTCCCAGTACTTAAGGCCAACAATGTTGACATGTACATAAATGGGCATGACCATTGCCTCCAACATATAAGCAGCACAGATAGCCCACTTCTATATTTAACGAGTGGAGCAGGATCAAAGGCATGGAGAGGTGATGTTAAAGAAACCCACTTTGATGTGAAATTCTTTTATGATGGTCAAGGTTTCATGTCTGTTCAAATGACTGAAAATGACACAAATTTTGCTTTCTACAATGTCTTTGGTGAGAAGATACACCATTGGAAAGTGACTAAGTCCACGATGCATCCTTCTATATGA
>Glyma.20g011900.1.p sequence-type=predicted peptide transcript=Glyma.20g011900.1 locus=Glyma.20g011900 ID=Glyma.20g011900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASPSSPLHSAAILCIYFVLPAFAELQRFQHQPKHDGSLNFLVIGDWGRKGHYNQSLVATQMGKMGDKLDLDFVVSTGDNFYNSGLKGVNDPLFLQSFSNIYTAKSLRKQWYSVLGNHDYRGNALAQLSPLLRKIDRRWFCQRSFILNAGVAEFFFIDTTPFMRKYFNNSNRHYDWRGVLPRQKYLKTLLKDLEEELRKSTARWKIAVGHHAIRSIGHHGDSPELVKHLVPVLKANNVDMYINGHDHCLQHISSTDSPLLYLTSGAGSKAWRGDVKETHFDVKFFYDGQGFMSVQMTENDTNFAFYNVFGEKIHHWKVTKSTMHPSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
