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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19940.1 | AT | oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding | JGI | N/A | IEA |
| GO:0006526 | GO-bp | arginine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003942 | GO-mf | N-acetyl-gamma-glutamyl-phosphate reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0003942 | GO-mf | N-acetyl-gamma-glutamyl-phosphate reductase activity | JGI | N/A | IEA |
| GO:0016620 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016620 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | EnsemblGenomes | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | JGI | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | JGI | N/A | IEA |
| KOG4354 | KOG | N-acetyl-gamma-glutamyl-phosphate reductase | JGI | N/A | IEA |
| PTHR14097 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR14097:SF7 | Panther | OXIDOREDUCTASE HTATIP2 | JGI | N/A | IEA |
| PF01118 | PFAM | Semialdehyde dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PF02774 | PFAM | Semialdehyde dehydrogenase, dimerisation domain | JGI | N/A | IEA |
| ARGSYN-PWY | SoyCyc9 | L-arginine biosynthesis I (via L-ornithine) | Plant Metabolic Network | ISS | |
| ARGSYNBSUB-PWY | SoyCyc9 | L-arginine biosynthesis II (acetyl cycle) | Plant Metabolic Network | ISS | |
| GLUTORN-PWY | SoyCyc9 | L-ornithine biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-51427 | SoyCyc9-rxn | N-acetyl-γ-glutamyl-phosphate reductase | Plant Metabolic Network | ISS |
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Glyma.20g009400 not represented in the dataset |
Glyma.20g009400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g179700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g01220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g009400.1 sequence-type=CDS polypeptide=Glyma.20g009400.1.p locus=Glyma.20g009400 ID=Glyma.20g009400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGCGCCATCTCTTTCAGTTCCATCCATTTTCACACTTGGAAAAACCCCAAGGGGTTTGGAAAGGTGAGAAAACAACCACATGGGAAGCTACTTGTAAAGTGTTCCAGCCAGAGTGGGAACCCATCTTCTTCGCAAAATGCGGTTCGTGTTGGTGTTGTTGGAGCTAGTGGCTACACTGGTTCTGAGGTTCTGCGACTCTTGGCAAATCATCCACAGTTTGGGATTGCACTGATGACTGCGGATAGGAAAGCTGGGCAGCCAATCTCTTCTGTGTTCCCACATTTGAGCACTTGGGACTTGCCAGATTTGATTTCAATAAAGGATGCAAACTTTTCTGATGTGGATGCTGTATTCTGTTGTTTGCCTCATGGAACTACTCAGGAAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCAGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGCATAGAGCACCAGATTTACAGAAAGAAGCTATATACGGATTGACAGAGGTTTTAAGGGAGGAAATACAGAATGCTCGTCTAGTTGCTAATCCTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGAGTGGAGCAGGACGCAGTGCCAAAGAAAATTTATTGTTCACTGAAGTAACTGAAGGTCTCAATTCTTATGGTGTTACCCGGCATCGCCATGTTCCTGAAATTGAACAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACACCTAATTCCAATGAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTGAGAATTGAGGACCTGTACCAGCAACTGAAGCTCTCATATGAGGACGAAGAATTTGTTGTTGTGTTGGAAAATGGAGCCATTCCTCGAACTCACAGCGTTAAAGGGACTAATTACTGTTTAATCAATGTTTTTCCAGACCGAATTCCTGGAAGAGCAATCATTATATCTGTTATTGATAATTTAGTGAAGGGAGCTTCAGGTCAAGCTTTACAAAACCTTAATTTGTTAATGGGATTTCCAGAAAATTTGGGACTTCATTACCTGCCTCTTTTTCCTTAG
>Glyma.20g009400.1.p sequence-type=predicted peptide transcript=Glyma.20g009400.1 locus=Glyma.20g009400 ID=Glyma.20g009400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSAISFSSIHFHTWKNPKGFGKVRKQPHGKLLVKCSSQSGNPSSSQNAVRVGVVGASGYTGSEVLRLLANHPQFGIALMTADRKAGQPISSVFPHLSTWDLPDLISIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSADFRLKDLSEYEEWYGQPHRAPDLQKEAIYGLTEVLREEIQNARLVANPGCYPTSVQLPLVPLIKASLIELKNIIIDAKSGVSGAGRSAKENLLFTEVTEGLNSYGVTRHRHVPEIEQGLADASGSKVTVSFTPHLIPMSRGMQSTIYVEMAPGVRIEDLYQQLKLSYEDEEFVVVLENGAIPRTHSVKGTNYCLINVFPDRIPGRAIIISVIDNLVKGASGQALQNLNLLMGFPENLGLHYLPLFP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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