SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g006300

Feature Type:gene_model
Chromosome:Gm20
Start:610711
stop:612757
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g006300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13230.1AT Tetratricopeptide repeat (TPR)-like superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PTHR24015Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24015:SF134Panther JGI N/AIEA
PF01535PFAM PPR repeat JGI N/AIEA

Expression Patterns of Glyma.20g006300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g006300 not represented in the dataset
Glyma.20g006300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g006300
ParalogEvidenceComments
Glyma.07g159200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g006300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.20g006300
>Glyma.20g006300.1 sequence-type=CDS polypeptide=Glyma.20g006300.1.p locus=Glyma.20g006300 ID=Glyma.20g006300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTATTCTACTCACCATTTCCAAGTTGCGTTGGATTCGAATCCTTGGAGGACGCTTCCAAACTGTTCGACCAAATGCCCCTCACTAACACCGTCTCTTTCGTCACCTTGGCCCAGGGTTTCTCCCGCTCCCACCAATTCCACCGCGCCCTTCACTTGCTTCTCAAAGAAGGATATGAGGTGAACCAGTTTGTTTTCACGACTCTTCTGAAGTTGCTGGGCATGGTATCTTGGACTGGGATGATGGCTTGCTATGCTGAGAATTACTGCCATGAAGATTCGTTGCTACTTTTCTGCCAGATGAGGGTTATGGGGTTTAGACCGAACAATTTTGAGGTTGGGAAAAGTGTTCATGGATGTGCTTTGAAAGCGTGTTATGATAGGGATCTTTATGTTGGCACTGTGCTGCTTGAATTGTTAACCAAGTCTGGAGAGATTGCTGAGACGCAGCAGTTTTTTGAAGAAATGCCGAAAGATGATCTTATTCCTTGGAGTCTCATGATAGCGCGGTATGCTCAGAGTGATAAAAGTAGGGAGGCTTTGGAGTTGTTTTGTCGAATGAGGCAGTCATCTGTTGTTCCAAATAATTCTACGTTTGCTAGTGTGCTGCAAGCTTGTGCATCTTCGGTTTCACTGAATTTGGGAAAGCAAATTCATTCTAATGTATTGAAAGTTGGCCTTGACTCAAATGTGTTTGTGTCAAATGCCCTCATGGATAAAAATGAGGTAACTTGGAACACTATAATTGTTGGTTATGTTCAGTTAGGGGATGGGGAGAAAGCATTAAATTTATTTTCAAATATGCTTGGATATGACATACATCCAACTGAAGTGACATACTCAAGTGTTCTGCGTGCCTCTGCTAGTTTAGTAGCATTAGAGCCAGGGCGTCAAATTCATTCCTTAACTATCAAAACCATGTATAACAAGGATAGTGTAGTTGCAAATTCTTTGATAGATATGTATGCCAAATGTGGTAGAATTGACGATTCACGACTAGCATTCGATAAGATGGATAAACGAGATGAAGTTTCATGGAATGCTATAATCTGTGGAGGCTCTAAATTTATTTGA
Predicted protein sequences of Glyma.20g006300
>Glyma.20g006300.1.p sequence-type=predicted peptide transcript=Glyma.20g006300.1 locus=Glyma.20g006300 ID=Glyma.20g006300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLFYSPFPSCVGFESLEDASKLFDQMPLTNTVSFVTLAQGFSRSHQFHRALHLLLKEGYEVNQFVFTTLLKLLGMVSWTGMMACYAENYCHEDSLLLFCQMRVMGFRPNNFEVGKSVHGCALKACYDRDLYVGTVLLELLTKSGEIAETQQFFEEMPKDDLIPWSLMIARYAQSDKSREALELFCRMRQSSVVPNNSTFASVLQACASSVSLNLGKQIHSNVLKVGLDSNVFVSNALMDKNEVTWNTIIVGYVQLGDGEKALNLFSNMLGYDIHPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDSRLAFDKMDKRDEVSWNAIICGGSKFI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo