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Report for Sequence Feature Glyma.20g001700

Feature Type:gene_model
Chromosome:Gm20
Start:178941
stop:182481
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g001700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G30340.1AT nodulin MtN21 /EamA-like transporter family protein JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
PF00892PFAM EamA-like transporter family JGI N/AIEA

Expression Patterns of Glyma.20g001700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g001700
ParalogEvidenceComments
Glyma.09g284000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g001700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g00370 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g001700
>Glyma.20g001700.2 sequence-type=transcript locus=Glyma.20g001700 ID=Glyma.20g001700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAAACTGAAATTAAGAGAGAGAAAAAAAAATCATGACGTTGTTGAAGTTCCATCAAGTGTGGAAGCCAGCTTTGGTGATGATTATAGTTAACTTAGCTCTGGCTTTTGTCAATATATTTCTGAAGAAGGTTCTTAATGAAGGAGTGGACTACTTGACCATCCTAACCTATCGACAAGCAATTTCAGCCATTTTCTTGACACCTATTGCTTGTTTCTATGAAAGGAAAAGGAAGCTGGAGGGCCACATAATATGTCTGCTTTTCCTAAGTGCTCTTGTGGGGGTAACACTCACTCAATGTCTGTATCTTATTGGACTAGAATATACATCTGCCACGTTCGCATGTGCTTTCCTAAATATGGTACCTGTATTCACCTTTATTATGGCGCTGCCACTGGGGATAGAGAAGGTGAACATGAAAAATCTGAGTGCTAAGGCAAAGGTGTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTATAAAGGAGTGCCCTTAATCAAACAACAACCAGAGCACTTAGCAGACAAAGGCACAATAACATCACCAGCCTCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTAATGCAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACTGCCATTTTGTCCTCTTTTGCCGCCATTCAATCAGCAATATTAACTTTGGTCATCGATAGAAGTAATGCCAAGTGGATTCTCAAAGGGAAGTTAGAGATAATGACTGTTGTATATGCTTATTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAAAAGTAAAGAGGAAGAACAAAGTGCCGTGAAGGGTACTCAAGAAAGTCAAGAAGATGAAGAAAGTAAGAATAATTTGGGGGCCAGTCCTAATGTACCTTCAAAGCTAAGGCCAAATGGGGAACAAGGATTCTCTGAATTACAAGTGAAGCAGTTAGCTATTACAGTAACTAAAAGTTGATAAAGTTTTAGTTTCAGGACTAATTTGTCAATTACACATGTCAAGCAGTGCATGTCAATTTCTTAATTACAAAGTTTTTATCTACCTATATCATGTAATGTACTAGTTGATAACTTGATATGCACATGCAAAACATGAGTTCCAATCTCACAGGGAGAGATATTATATGAATATCCATAATATTAATGGTTTC
Coding sequences of Glyma.20g001700
>Glyma.20g001700.1 sequence-type=CDS polypeptide=Glyma.20g001700.1.p locus=Glyma.20g001700 ID=Glyma.20g001700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGTTGTTGAAGTTCCATCAAGTGTGGAAGCCAGCTTTGGTGATGATTATAGTTAACTTAGCTCTGGCTTTTGTCAATATATTTCTGAAGAAGGTTCTTAATGAAGGAGTGGACTACTTGACCATCCTAACCTATCGACAAGCAATTTCAGCCATTTTCTTGACACCTATTGCTTGTTTCTATGAAAGGAAAAGGAAGCTGGAGGGCCACATAATATGTCTGCTTTTCCTAAGTGCTCTTGTGGGGGTAACACTCACTCAATGTCTGTATCTTATTGGACTAGAATATACATCTGCCACGTTCGCATGTGCTTTCCTAAATATGGTACCTGTATTCACCTTTATTATGGCGCTGCCACTGGGGATAGAGAAGGTGAACATGAAAAATCTGAGTGCTAAGGCAAAGGTGTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTATAAAGGAGTGCCCTTAATCAAACAACAACCAGAGCACTTAGCAGACAAAGGCACAATAACATCACCAGCCTCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTAATGCAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACTGCCATTTTGTCCTCTTTTGCCGCCATTCAATCAGCAATATTAACTTTGGTCATCGATAGAAGTAATGCCAAGTGGATTCTCAAAGGGAAGTTAGAGATAATGACTGTTGTATATGCTGGGCTGGTAGGTTCAGGCTTGTGCTATGTGGCAATGTCATGGTGTGTGAAACAAAGGGGTCCAGTATTTACTTCAGCATTTACCCCTCTTCTACAAATGTTCGTGGCTGTGCTTGATTTCTCTATATTACATGAGGAAATTTATCTTGGAAGTATTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAAAAGTAAAGAGGAAGAACAAAGTGCCGTGAAGGGTACTCAAGAAAGTCAAGAAGATGAAGAAAGTAAGAATAATTTGGGGGCCAGTCCTAATGTACCTTCAAAGCTAAGGCCAAATGGGGAACAAGGATTCTCTGAATTACAAGTGAAGCAGTTAGCTATTACAGTAACTAAAAGTTGA

>Glyma.20g001700.2 sequence-type=CDS polypeptide=Glyma.20g001700.2.p locus=Glyma.20g001700 ID=Glyma.20g001700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGTTGTTGAAGTTCCATCAAGTGTGGAAGCCAGCTTTGGTGATGATTATAGTTAACTTAGCTCTGGCTTTTGTCAATATATTTCTGAAGAAGGTTCTTAATGAAGGAGTGGACTACTTGACCATCCTAACCTATCGACAAGCAATTTCAGCCATTTTCTTGACACCTATTGCTTGTTTCTATGAAAGGAAAAGGAAGCTGGAGGGCCACATAATATGTCTGCTTTTCCTAAGTGCTCTTGTGGGGGTAACACTCACTCAATGTCTGTATCTTATTGGACTAGAATATACATCTGCCACGTTCGCATGTGCTTTCCTAAATATGGTACCTGTATTCACCTTTATTATGGCGCTGCCACTGGGGATAGAGAAGGTGAACATGAAAAATCTGAGTGCTAAGGCAAAGGTGTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTATAAAGGAGTGCCCTTAATCAAACAACAACCAGAGCACTTAGCAGACAAAGGCACAATAACATCACCAGCCTCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTAATGCAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACTGCCATTTTGTCCTCTTTTGCCGCCATTCAATCAGCAATATTAACTTTGGTCATCGATAGAAGTAATGCCAAGTGGATTCTCAAAGGGAAGTTAGAGATAATGACTGTTGTATATGCTTATTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAA
Predicted protein sequences of Glyma.20g001700
>Glyma.20g001700.1.p sequence-type=predicted peptide transcript=Glyma.20g001700.1 locus=Glyma.20g001700 ID=Glyma.20g001700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLLKFHQVWKPALVMIIVNLALAFVNIFLKKVLNEGVDYLTILTYRQAISAIFLTPIACFYERKRKLEGHIICLLFLSALVGVTLTQCLYLIGLEYTSATFACAFLNMVPVFTFIMALPLGIEKVNMKNLSAKAKVLGTFVCIGGALMLILYKGVPLIKQQPEHLADKGTITSPASKLKKWIIGSLLLTAGCLLWSSWFLMQARISKKYPCQYSSTAILSSFAAIQSAILTLVIDRSNAKWILKGKLEIMTVVYAGLVGSGLCYVAMSWCVKQRGPVFTSAFTPLLQMFVAVLDFSILHEEIYLGSIAGSVLVISGTYILLWGKSKEEEQSAVKGTQESQEDEESKNNLGASPNVPSKLRPNGEQGFSELQVKQLAITVTKS*

>Glyma.20g001700.2.p sequence-type=predicted peptide transcript=Glyma.20g001700.2 locus=Glyma.20g001700 ID=Glyma.20g001700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLLKFHQVWKPALVMIIVNLALAFVNIFLKKVLNEGVDYLTILTYRQAISAIFLTPIACFYERKRKLEGHIICLLFLSALVGVTLTQCLYLIGLEYTSATFACAFLNMVPVFTFIMALPLGIEKVNMKNLSAKAKVLGTFVCIGGALMLILYKGVPLIKQQPEHLADKGTITSPASKLKKWIIGSLLLTAGCLLWSSWFLMQARISKKYPCQYSSTAILSSFAAIQSAILTLVIDRSNAKWILKGKLEIMTVVYAYCRISLGYFWHVYSTLG*






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