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Report for Sequence Feature Glyma.20g000500

Feature Type:gene_model
Chromosome:Gm20
Start:41852
stop:45797
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g000500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38220.1AT Peptidase M20/M25/M40 family protein JGI N/AIEA
AT4G38220.2AT Peptidase M20/M25/M40 family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0010043GO-bp response to zinc ion EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0004046GO-mf aminoacylase activity EnsemblGenomesN/AIEA
GO:0008233GO-mf peptidase activity JGI N/AIEA
GO:0008237GO-mf metallopeptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG2275 KOG Aminoacylase ACY1 and related metalloexopeptidases JGI N/AIEA
PTHR11014Panther PEPTIDASE M20 FAMILY MEMBER JGI N/AIEA
PTHR11014:SF16Panther CARBOXYPEPTIDASE S JGI N/AIEA
PF01546PFAM Peptidase family M20/M25/M40 JGI N/AIEA
PF07687PFAM Peptidase dimerisation domain JGI N/AIEA
GN7V-42933SoyCyc9-rxn aminoacylase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g000500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g000500 not represented in the dataset
Glyma.20g000500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g000500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g00230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g000500
>Glyma.20g000500.2 sequence-type=transcript locus=Glyma.20g000500 ID=Glyma.20g000500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAGTAAAGCAGTTGCAATGTGCGATAGTGGGTGGCCACAGAGAGAGAAAGATAAGAAGTAAGGAGGTAGTAGGCAGTGTGTTTGTTTGTGTTGTGTTGGGCGTTAAGGATGGTGTTGAATTGCAAAAGCAAAAACATCCTCCTTTTAGTTTTGTTAGCCATAGCAATAGAAACGGGATGGTCATCAGAAGAAGAAAGCAGCATCATATCACGATTCCAGCAATACCTGAAAATCAACACTGCCCAACCCACCCCGCGTTACCACGAAGCCGCCGATTTCCTGATATCCCAAGGTAAAGCCCTCTCCCTGGAATCCCAAAGCATTGAGTTTGTGGCAGGCAAGCCACTTGTCCTTCTGAAATGGGAAGGCTCAAACCCTAACCTCCCCTCCATCCTCCTCTATTCCCACACCGACGTCGTCCCATCGGAGCACTCTAAGTGGACCCACCACCCCTTCAGCGCCCACCTCGACTCCTCCGGCCGCATCTTCTCCCGAGGCTCTCAGGACATGAAGTGCGTCGGCATGCAGTACCTCGAGGCCCTCCGACTCCTCAAGTCCCACAACTTCCGCCCCCTCCGCTCCCTCTACCTCGCTTTCTCCCCCGACGAGGAAATCGGTGGCCACGACGGTGCCGAGAAGTTCGCTGACTCCTCTATCTTCCAAAGTATGAACGTTGGCGTTGTTCTTGACGAAGGTCTGGCTTCTCCCGACCCCCATTACCGGTCTTTCTATGCCGAAAGGAGTCCCTGGTGGTTGGTCATCAAGGCCTTTGGTGTTCCCGGCCATGGCGCCAAGCTTTATGATAACTCTGCCATGGAGAATCTCTTTAAGAGCATTGAAAGTATCCGAAGGTTCCGCTCCTCGCAGTTCGACTTGATCAAGGCCGGCTTCAAGGCCGAAGGCGATGTTGTTTCTGTTAATATGGTCTTTCTCAAGGCTGGAACTCCATCTCCAACTGGTTTTGTCATGAATTTGCAGCCTTCTGAAGCAGAAGCTGGATTTGATATTCGGGTGCCACCCACTGCTGATCCAGAATCGTTGGAGAGGCGCATTGCTGAGGAATGGGCACCTTCATCCCGCAATATGTCATTTACTTTCAAACAGAAGGCGCACACACGAGATAAGTCTGGGAAACCAATCCTCACCAAAACTGATAGTTCCAATCCCTGGTGGGCCCTTTTAGAAAATGCTGTCCAAAAGGCTGGTGGGAAACTTGGTAAGCCCGAGGTCTTTCCCGCCGCTACAGATTCACGCTACTTCCGTGAACGTGGATTACCAGCAATTGGATTCTCACCTATGGCAAACACTCCTGTTCTTCTACATGACCACAATGAGTTTCTGCACAAAGATGAATACTTGAAAGGGATTAAAATCTACGAGTCAATAATTAAGGTATATGCATCGTTGGATGATAATGGAAGAGATGGAGCATCCAAAGATGAGTTATGAGCAAGTGGTGTGGCACCTACCCCTACCTAATTCTCATTTTCTGCCTTTCCTTATGTAACAATAGAGAGGAAAAATAACACCTCAACTGACTTTGTTGTAGCTTCTGACACATAACAATAAAGAGGAAACAAATATGTTTGTTTCAAACTTTGCTCAGAGCAACTTCACCCTTGCACGAATGCTTTCATAAATAATTTTCTTGTGCACAATATTATGAAAACTCAATCCTTCATTT
Coding sequences of Glyma.20g000500
>Glyma.20g000500.1 sequence-type=CDS polypeptide=Glyma.20g000500.1.p locus=Glyma.20g000500 ID=Glyma.20g000500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTTGAATTGCAAAAGCAAAAACATCCTCCTTTTAGTTTTGTTAGCCATAGCAATAGAAACGGGATGGTCATCAGAAGAAGAAAGCAGCATCATATCACGATTCCAGCAATACCTGAAAATCAACACTGCCCAACCCACCCCGCGTTACCACGAAGCCGCCGATTTCCTGATATCCCAAGGTAAAGCCCTCTCCCTGGAATCCCAAAGCATTGAGTTTGTGGCAGGCAAGCCACTTGTCCTTCTGAAATGGGAAGGCTCAAACCCTAACCTCCCCTCCATCCTCCTCTATTCCCACACCGACGTCGTCCCATCGGAGCACTCTAAGTGGACCCACCACCCCTTCAGCGCCCACCTCGACTCCTCCGGCCGCATCTTCTCCCGAGGCTCTCAGGACATGAAGTGCGTCGGCATGCAGTACCTCGAGGCCCTCCGACTCCTCAAGTCCCACAACTTCCGCCCCCTCCGCTCCCTCTACCTCGCTTTCTCCCCCGACGAGGAAATCGGTGGCCACGACGGTGCCGAGAAGTTCGCTGACTCCTCTATCTTCCAAAGTATGAACGTTGGCGTTGTTCTTGACGAAGGTCTGGCTTCTCCCGACCCCCATTACCGGTCTTTCTATGCCGAAAGGAGTCCCTGGTGGTTGGTCATCAAGGCCTTTGGTGTTCCCGGCCATGGCGCCAAGCTTTATGATAACTCTGCCATGGAGAATCTCTTTAAGAGCATTGAAAGTATCCGAAGGTTCCGCTCCTCGCAGTTCGACTTGATCAAGGCCGGCTTCAAGGCCGAAGGCGATGTTGTTTCTGTTAATATGGTCTTTCTCAAGGCTGGAACTCCATCTCCAACTGGTTTTGTCATGAATTTGCAGCCTTCTGAAGCAGAAGCTGGATTTGATATTCGGGTGCCACCCACTGCTGATCCAGAATCGTTGGAGAGGCGCATTGCTGAGGAATGGGCACCTTCATCCCGCAATATGTCATTTACTCTCGGGCAGTTCAAACAGAAGGCGCACACACGAGATAAGTCTGGGAAACCAATCCTCACCAAAACTGATAGTTCCAATCCCTGGTGGGCCCTTTTAGAAAATGCTGTCCAAAAGGCTGGTGGGAAACTTGGTAAGCCCGAGGTCTTTCCCGCCGCTACAGATTCACGCTACTTCCGTGAACGTGGATTACCAGCAATTGGATTCTCACCTATGGCAAACACTCCTGTTCTTCTACATGACCACAATGAGTTTCTGCACAAAGATGAATACTTGAAAGGGATTAAAATCTACGAGTCAATAATTAAGGTATATGCATCGTTGGATGATAATGGAAGAGATGGAGCATCCAAAGATGAGTTATGA

>Glyma.20g000500.2 sequence-type=CDS polypeptide=Glyma.20g000500.2.p locus=Glyma.20g000500 ID=Glyma.20g000500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTTGAATTGCAAAAGCAAAAACATCCTCCTTTTAGTTTTGTTAGCCATAGCAATAGAAACGGGATGGTCATCAGAAGAAGAAAGCAGCATCATATCACGATTCCAGCAATACCTGAAAATCAACACTGCCCAACCCACCCCGCGTTACCACGAAGCCGCCGATTTCCTGATATCCCAAGGTAAAGCCCTCTCCCTGGAATCCCAAAGCATTGAGTTTGTGGCAGGCAAGCCACTTGTCCTTCTGAAATGGGAAGGCTCAAACCCTAACCTCCCCTCCATCCTCCTCTATTCCCACACCGACGTCGTCCCATCGGAGCACTCTAAGTGGACCCACCACCCCTTCAGCGCCCACCTCGACTCCTCCGGCCGCATCTTCTCCCGAGGCTCTCAGGACATGAAGTGCGTCGGCATGCAGTACCTCGAGGCCCTCCGACTCCTCAAGTCCCACAACTTCCGCCCCCTCCGCTCCCTCTACCTCGCTTTCTCCCCCGACGAGGAAATCGGTGGCCACGACGGTGCCGAGAAGTTCGCTGACTCCTCTATCTTCCAAAGTATGAACGTTGGCGTTGTTCTTGACGAAGGTCTGGCTTCTCCCGACCCCCATTACCGGTCTTTCTATGCCGAAAGGAGTCCCTGGTGGTTGGTCATCAAGGCCTTTGGTGTTCCCGGCCATGGCGCCAAGCTTTATGATAACTCTGCCATGGAGAATCTCTTTAAGAGCATTGAAAGTATCCGAAGGTTCCGCTCCTCGCAGTTCGACTTGATCAAGGCCGGCTTCAAGGCCGAAGGCGATGTTGTTTCTGTTAATATGGTCTTTCTCAAGGCTGGAACTCCATCTCCAACTGGTTTTGTCATGAATTTGCAGCCTTCTGAAGCAGAAGCTGGATTTGATATTCGGGTGCCACCCACTGCTGATCCAGAATCGTTGGAGAGGCGCATTGCTGAGGAATGGGCACCTTCATCCCGCAATATGTCATTTACTTTCAAACAGAAGGCGCACACACGAGATAAGTCTGGGAAACCAATCCTCACCAAAACTGATAGTTCCAATCCCTGGTGGGCCCTTTTAGAAAATGCTGTCCAAAAGGCTGGTGGGAAACTTGGTAAGCCCGAGGTCTTTCCCGCCGCTACAGATTCACGCTACTTCCGTGAACGTGGATTACCAGCAATTGGATTCTCACCTATGGCAAACACTCCTGTTCTTCTACATGACCACAATGAGTTTCTGCACAAAGATGAATACTTGAAAGGGATTAAAATCTACGAGTCAATAATTAAGGTATATGCATCGTTGGATGATAATGGAAGAGATGGAGCATCCAAAGATGAGTTATGA
Predicted protein sequences of Glyma.20g000500
>Glyma.20g000500.1.p sequence-type=predicted peptide transcript=Glyma.20g000500.1 locus=Glyma.20g000500 ID=Glyma.20g000500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLNCKSKNILLLVLLAIAIETGWSSEEESSIISRFQQYLKINTAQPTPRYHEAADFLISQGKALSLESQSIEFVAGKPLVLLKWEGSNPNLPSILLYSHTDVVPSEHSKWTHHPFSAHLDSSGRIFSRGSQDMKCVGMQYLEALRLLKSHNFRPLRSLYLAFSPDEEIGGHDGAEKFADSSIFQSMNVGVVLDEGLASPDPHYRSFYAERSPWWLVIKAFGVPGHGAKLYDNSAMENLFKSIESIRRFRSSQFDLIKAGFKAEGDVVSVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPSSRNMSFTLGQFKQKAHTRDKSGKPILTKTDSSNPWWALLENAVQKAGGKLGKPEVFPAATDSRYFRERGLPAIGFSPMANTPVLLHDHNEFLHKDEYLKGIKIYESIIKVYASLDDNGRDGASKDEL*

>Glyma.20g000500.2.p sequence-type=predicted peptide transcript=Glyma.20g000500.2 locus=Glyma.20g000500 ID=Glyma.20g000500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLNCKSKNILLLVLLAIAIETGWSSEEESSIISRFQQYLKINTAQPTPRYHEAADFLISQGKALSLESQSIEFVAGKPLVLLKWEGSNPNLPSILLYSHTDVVPSEHSKWTHHPFSAHLDSSGRIFSRGSQDMKCVGMQYLEALRLLKSHNFRPLRSLYLAFSPDEEIGGHDGAEKFADSSIFQSMNVGVVLDEGLASPDPHYRSFYAERSPWWLVIKAFGVPGHGAKLYDNSAMENLFKSIESIRRFRSSQFDLIKAGFKAEGDVVSVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPSSRNMSFTFKQKAHTRDKSGKPILTKTDSSNPWWALLENAVQKAGGKLGKPEVFPAATDSRYFRERGLPAIGFSPMANTPVLLHDHNEFLHKDEYLKGIKIYESIIKVYASLDDNGRDGASKDEL*






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