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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34910.1 | AT | P-loop containing nucleoside triphosphate hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0010501 | GO-bp | RNA secondary structure unwinding | EnsemblGenomes | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0004004 | GO-mf | ATP-dependent RNA helicase activity | EnsemblGenomes | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24031:SF29 | Panther | JGI | N/A | IEA | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | N/A | IEA |
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Glyma.20G235400 not represented in the dataset |
Glyma.20G235400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g235400 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma20g37930 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g235400.1 sequence-type=CDS polypeptide=Glyma.20g235400.1.p locus=Glyma.20g235400 ID=Glyma.20g235400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGTCATACTCAATGCATACATCGACATCAATTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTTGGATCATGGAAGTCTAGGCAACATGCTAAGATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTGAAAGTGTAGCGGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTAACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATCCACCACCTCCGCACCTACGTGATGTGCCTGAGTACCTATTAGACAAACCAACAAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATCCAAGAGAAAATTAA
>Glyma.20g235400.1.p sequence-type=predicted peptide transcript=Glyma.20g235400.1 locus=Glyma.20g235400 ID=Glyma.20g235400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCHTQCIHRHQFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQHAKIKLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTLEEIRSFVRDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLARDPREN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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