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Report for Sequence Feature Glyma.20G210400

Feature Type:gene_model
Chromosome:Gm20
Start:44642090
stop:44644802
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20G210400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14550.1AT indole-3-acetic acid inducible 14 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PF02309PFAM AUX/IAA family JGI N/AIEA

Proteins Associated with Glyma.20G210400
LocusGene SymbolProtein Name
IAA61 Indole-3-Acetic Acid Responsive Gene 61

Expression Patterns of Glyma.20G210400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20G210400
ParalogEvidenceComments
Glyma.10g180100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20G210400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g210400 Wm82.a4.v1ISS As supplied by JGI
Glyma20g35270 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20G210400
>Glyma.20g210400.1 sequence-type=CDS polypeptide=Glyma.20g210400.1.p locus=Glyma.20g210400 ID=Glyma.20g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCCACAAGCACAAGTTCCTCAAAGCTATATTATTGAGGGCTATCACACACACTCTCTCTCTCTTGTAATCTATATAGCCAAACAAACCAAGCAGCATTATAATAGAAAGAGGACACAAAGTGAAAGAGAAGGGAGCTATAGCCATAAGGAGAAAAACTTTCAAAGAGGTGAAAGCAAAAGAGTTCTTCTTTTCCTTTTTTATATATACTTGGGTGCTAAGCTGTGTGAGTTCATTGACAAGCCTGAAATGGCAACTATGCTGACAAAGGAGCATGGTCTGAACCTCAAGGAGACCGAGCTTTGCCTCGGTTTGCCTGGTGGGGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAACTTAATCTTCATTCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGATCCTGCCAAGCCACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCAGTACAAAAGGTTAGCACTGAGGATGTGGCAGAGAAGACAACAAGCAGCACTGCTAATCCTGGGGCATTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTGCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAAGCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAGGGATCAGAAGCGATTGGGCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA
Predicted protein sequences of Glyma.20G210400
>Glyma.20g210400.1.p sequence-type=predicted peptide transcript=Glyma.20g210400.1 locus=Glyma.20g210400 ID=Glyma.20g210400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQPQAQVPQSYIIEGYHTHSLSLVIYIAKQTKQHYNRKRTQSEREGSYSHKEKNFQRGESKRVLLFLFYIYLGAKLCEFIDKPEMATMLTKEHGLNLKETELCLGLPGGGGGGGGGGGGGGGEVETPRATGKRGFSETVDLKLNLHSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSTEDVAEKTTSSTANPGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS*






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