SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20G141600

Feature Type:gene_model
Chromosome:Gm20
Start:38036725
stop:38039025
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20G141600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05320.2AT polyubiquitin 10 JGI N/AIEA
AT4G05320.3AT polyubiquitin 10 JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0005 KOG Ubiquitin-like protein JGI N/AIEA
PTHR10666Panther UBIQUITIN JGI N/AIEA
PF00240PFAM Ubiquitin family JGI N/AIEA

Proteins Associated with Glyma.20G141600
LocusGene SymbolProtein Name
SUBI-1 polyubiquitin
Ubiqutin Ubiqutin

Expression Patterns of Glyma.20G141600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20G141600
ParalogEvidenceComments
Glyma.10g251900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20G141600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g141600 Wm82.a4.v1ISS As supplied by JGI
Glyma20g27950 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20G141600
>Glyma.20g141600.2 sequence-type=transcript locus=Glyma.20g141600 ID=Glyma.20g141600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAATTGCAATTCTCAATTTCCTAGAAGGACTCTCCGAAAATGCATCCAATACCAAATATTACCCGTGTCATAGGCACCAAGTGACACCATACATGAACACGCGTCACAATATGACTGGAGAAGGGTTCCACACCTTATGCTATAAAACGCCCCACACCCCTCCTCCTTCCTTCGCAGTTCAATTCCAATATATTCCATTCTCTCTGTGTATTTCCCTACCTCTCCCTTCAAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACCATCgacaacgtcaaggccaagatccaggacaaggaAGGAATCCCCCCGGACCAGCAACGTCTCATTTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGACTACAACATTCAGAAGGAGAGTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACACTCACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTAGAAGTCGAAAGCTCCGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGGGGGTTTTAAGCTCGTTGTGTAATGTTGGATGTGTTCCCAAAACATTTGAAGAACTTTGATGTTTAATGGGTCTGTAATAATGTCCCTTGAAAATAAGTTCGGTTTGTGTTGAACTCAATTGTGTCCCATTAATAATAGTACTCTAATATCCCACCTACGTTTGTTATGAATGTGTGAAATATGAAATGATTAATTGTCATATCGTGTTGTTTTAATTTGTTCTGAATTGGCTAGAGGGGACTTAATATGGATTTTTTATTCGATTTGTGTGGTCTTCCATGCTTGTCATGAAGGAAAAACAGGGATGAGTTGTGTGAAGGATGGTGATCATCCTTCGAATTCGATGGTATTATAGGTTGAAGTCGGTCATTGATAGATGTTATGTAAAGGCAACAATGAAATTTGAACAAACTGAGATCATTGTGGTGATCAATTGAAATGGGAAGGTTCTTCATCAACTGTGGAGTATTGATGGGTAGGAGACAACTAGCTCAAGGCATAAGGGTTTTTTGTTTCATACTTAAAATCAATTTCCCATACTATCAATAAGTTTCAATATAAAATTTA
Coding sequences of Glyma.20G141600
>Glyma.20g141600.1 sequence-type=CDS polypeptide=Glyma.20g141600.1.p locus=Glyma.20g141600 ID=Glyma.20g141600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAGCAACGTCTCATTTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGACTACAACATTCAGAAGGAGAGTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACACTCACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTAGAAGTCGAAAGCTCCGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTTGCTGACTACAACATCCAGAAGGAGTCAACTCTCCACTTGGTGTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACGGGTAAGACTATTACCCTCGAGGTGGAGAGCTCTGACACCATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGGGGGTTTTAA

>Glyma.20g141600.2 sequence-type=CDS polypeptide=Glyma.20g141600.2.p locus=Glyma.20g141600 ID=Glyma.20g141600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAGCAACGTCTCATTTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGACTACAACATTCAGAAGGAGAGTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACACTCACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTAGAAGTCGAAAGCTCCGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGGGGGTTTTAA
Predicted protein sequences of Glyma.20G141600
>Glyma.20g141600.1.p sequence-type=predicted peptide transcript=Glyma.20g141600.1 locus=Glyma.20g141600 ID=Glyma.20g141600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

>Glyma.20g141600.2.p sequence-type=predicted peptide transcript=Glyma.20g141600.2 locus=Glyma.20g141600 ID=Glyma.20g141600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo