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Report for Sequence Feature Glyma.20G071000

Feature Type:gene_model
Chromosome:Gm20
Start:25298698
stop:25300941
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20G071000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11910.1AT ubiquitin-specific protease 13 JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0016579GO-bp protein deubiquitination EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0036459GO-mf thiol-dependent ubiquitinyl hydrolase activity EnsemblGenomesN/AIEA
PTHR24006Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24006:SF265Panther JGI N/AIEA
PF00917PFAM MATH domain JGI N/AIEA

Expression Patterns of Glyma.20G071000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20G071000 not represented in the dataset
Glyma.20G071000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.



Coding sequences of Glyma.20G071000
>Glyma.20g071000.1 sequence-type=CDS polypeptide=Glyma.20g071000.1.p locus=Glyma.20g071000 ID=Glyma.20g071000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACGTACACAGCATTGGGGTTTATTGTTACGAAATTCCTGAAACGTCCTCTTCCGTGCGCGAGCAACCCTTCTCACTCAAAAAGTCACGGTTCTTCACATTCCTGACTCTCACTATATATACACTCACAGACACTAATTCTTTCTTCGTCTATGAATTTCTTTCTTTTCTGCGTCTTTACCTACCTTTTAGTACAACAATGACTCTCATGACTCCTCCACCGATGGATCAGCAACAGCAGCAGCAGGAGCACGATGAGATGCTGGTTCCTCGCTCTGACTTGCCAGAAGGTCCTCAACCTATGGAAGACCAAGCAGAAAACATGAGTACAGTGGATGCTCCAACAGTGGATGATACACCAGCTGCGAGATTCACTTGGACCATTGACAATTTTTCTAGTATTCCCAAAAAATTATTTTCTGACATTTTCTGTGTTGGGGGCTATAAGTGGCGAATACTTATATTTCCAAAGGGGAATGGTGGTGACCATCTGTCAATGTATGTGGATGTTGCAGATTCAGCTACATTGCCCTATGGTTGGAGTAGATATGCCCATTTCAACTTGACTGTTGTTAATCAAATTCATAGTAAATATTCAATAAGAAAAGGTAATTTCTTTGCAGCTGTTATTCATTGA
Predicted protein sequences of Glyma.20G071000
>Glyma.20g071000.1.p sequence-type=predicted peptide transcript=Glyma.20g071000.1 locus=Glyma.20g071000 ID=Glyma.20g071000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYVHSIGVYCYEIPETSSSVREQPFSLKKSRFFTFLTLTIYTLTDTNSFFVYEFLSFLRLYLPFSTTMTLMTPPPMDQQQQQQEHDEMLVPRSDLPEGPQPMEDQAENMSTVDAPTVDDTPAARFTWTIDNFSSIPKKLFSDIFCVGGYKWRILIFPKGNGGDHLSMYVDVADSATLPYGWSRYAHFNLTVVNQIHSKYSIRKGNFFAAVIH*






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