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Report for Sequence Feature Glyma.19g261600

Feature Type:gene_model
Chromosome:Gm19
Start:50485021
stop:50486522
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46890.1AT Protein of unknown function (DUF1295) JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0016627GO-mf oxidoreductase activity, acting on the CH-CH group of donors EnsemblGenomesN/AIEA
GO:0016627GO-mf oxidoreductase activity, acting on the CH-CH group of donors JGI N/AIEA
KOG4650 KOG Predicted steroid reductase JGI N/AIEA
PF06966PFAM Protein of unknown function (DUF1295) JGI N/AIEA
GN7V-66704SoyCyc9-rxn cholestenone 5α-reductase Plant Metabolic Network ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g261600 not represented in the dataset

Glyma.19g261600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Corresponding NameAnnotation VersionEvidenceComments
Glyma19g45120 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.19g261600.2 sequence-type=transcript locus=Glyma.19g261600 ID=Glyma.19g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATGGGCGTGGATATACAAACTTTGGGATCATAGAATCCCCTAATTAATCATTAAGTGTGTGGAATAACGGATCAGGTGCATGGCGTGGCTGTGTGGGGAGCCACAATTGTGCTGAACTCATTATTTGGAGGTTCTGCGCCTTCCATTTTGGAGAGCTATAAAAGTGGAAGCCATAACGAACGAACAGACGGAGCAGAGGACAAGATGGGTAGTGTGAGTTATAGCAATCTGAAGAACGCCATGATAGCATTCTTGGTCCCTCTACCCTCCATCCTATTCTACCTCTCATTCCAATCGGCCATTAGTACTCCTTCTTCTTGGTCTTCTCTGTGGACATGGTGCTATCACCACCCTCTGCTATTGGCCAATGTCCTTTTCTTCTTCAATGTCAATTTCCTCTTCTGGCTCATCGGCCTAATCCAATCCAGCCACTGGGTACACTTTCCACTTTTTCCTTCTTTTCTGCTTTGGTTTTTCAAATTGACACCTTTTGCTGTTGCTGTTGGTGCAGATGATTGACCCGTATTGGACAGTGATACCTGTGATGCTTGTTCATTACTATTCAACTCACCCTTTGGCACAGTATCAGTGGTGGAGGTCGAGGATCGTAACGTTGTTGACTTGGGCGTGGAGTGTTAGGCTGATCCACAACTACTTCAGGCGAGAAAAGTGGCAGTGGGGTGCCAGGGAGGATTGGCGTTTCACTGATTTGAGCCATCGCTATGGAAGGCATTGGTGGTGGGCTTCTTTCTTCGCCATCTACGTCCCTCAGCAGGTGTTTCTGATTGGATTGTCTCTTCCGTTCTATGTCATCCACTCGGTGAACCAGCCTCTGAGCATGTGGGACTTGGTAGCCATAGTTGTGTGTGTATCTGGCATTGTCACGGCATACATTGCTGATACTCAGCTTTACAACTTTGTGAGTAGAAAGAACAAGGAGGTCCCTATTCTTGACAAAGGGTTGTGGTATTATTCTCGGCATCCAAATTACTTTGGAGAGCAGGTGTGGTGGTGGGGAATGGCTGTGTTTGCTTGGAACCTGGGACATGGATGGGCTTTCATAGGGGCATTAGCCAATACCATGTGTTTGGCTTATGTCACTAAGCTTGTGGAGGACCGAATGTTGAAACAAGATAGCAGAGCAGAGGCGTTTAGGCTCTATCAGAAGACTACTTCCCTATGGATTCCTTGGTTCAAGTCATCTCCTTTAGGACTCAAATCTAAGGATGCTTGATTTTCTTTTTCCCCTTGTTCGTTAGTTGATTGTACCACCATCTTCTTAATTTTGCCTAGTTTGTTCGATTATGTAAGAGAGCCATGTGTGTGCTCCATGATTTTTGTATAATATAGCACTTTCCTATAGACTATCTCATTTTAATGCCACAAGCTATTAAAACCTTCAATATAAATATTTATTTATTTTAA

>Glyma.19g261600.1 sequence-type=CDS polypeptide=Glyma.19g261600.1.p locus=Glyma.19g261600 ID=Glyma.19g261600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAGTGTGAGTTATAGCAATCTGAAGAACGCCATGATAGCATTCTTGGTCCCTCTACCCTCCATCCTATTCTACCTCTCATTCCAATCGGCCATTAGTACTCCTTCTTCTTGGTCTTCTCTGTGGACATGGTGCTATCACCACCCTCTGCTATTGGCCAATGTCCTTTTCTTCTTCAATGTCAATTTCCTCTTCTGGCTCATCGGCCTAATCCAATCCAGCCACTGGATGATTGACCCGTATTGGACAGTGATACCTGTGATGCTTGTTCATTACTATTCAACTCACCCTTTGGCACAGTATCAGTGGTGGAGGTCGAGGATCGTAACGTTGTTGACTTGGGCGTGGAGTGTTAGGCTGATCCACAACTACTTCAGGCGAGAAAAGTGGCAGTGGGGTGCCAGGGAGGATTGGCGTTTCACTGATTTGAGCCATCGCTATGGAAGGCATTGGTGGTGGGCTTCTTTCTTCGCCATCTACGTCCCTCAGCAGGTGTTTCTGATTGGATTGTCTCTTCCGTTCTATGTCATCCACTCGGTGAACCAGCCTCTGAGCATGTGGGACTTGGTAGCCATAGTTGTGTGTGTATCTGGCATTGTCACGGCATACATTGCTGATACTCAGCTTTACAACTTTGTGAGTAGAAAGAACAAGGAGGTCCCTATTCTTGACAAAGGGTTGTGGTATTATTCTCGGCATCCAAATTACTTTGGAGAGCAGGTGTGGTGGTGGGGAATGGCTGTGTTTGCTTGGAACCTGGGACATGGATGGGCTTTCATAGGGGCATTAGCCAATACCATGTGTTTGGCTTATGTCACTAAGCTTGTGGAGGACCGAATGTTGAAACAAGATAGCAGAGCAGAGGCGTTTAGGCTCTATCAGAAGACTACTTCCCTATGGATTCCTTGGTTCAAGTCATCTCCTTTAGGACTCAAATCTAAGGATGCTTGA

>Glyma.19g261600.2 sequence-type=CDS polypeptide=Glyma.19g261600.2.p locus=Glyma.19g261600 ID=Glyma.19g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTGACCCGTATTGGACAGTGATACCTGTGATGCTTGTTCATTACTATTCAACTCACCCTTTGGCACAGTATCAGTGGTGGAGGTCGAGGATCGTAACGTTGTTGACTTGGGCGTGGAGTGTTAGGCTGATCCACAACTACTTCAGGCGAGAAAAGTGGCAGTGGGGTGCCAGGGAGGATTGGCGTTTCACTGATTTGAGCCATCGCTATGGAAGGCATTGGTGGTGGGCTTCTTTCTTCGCCATCTACGTCCCTCAGCAGGTGTTTCTGATTGGATTGTCTCTTCCGTTCTATGTCATCCACTCGGTGAACCAGCCTCTGAGCATGTGGGACTTGGTAGCCATAGTTGTGTGTGTATCTGGCATTGTCACGGCATACATTGCTGATACTCAGCTTTACAACTTTGTGAGTAGAAAGAACAAGGAGGTCCCTATTCTTGACAAAGGGTTGTGGTATTATTCTCGGCATCCAAATTACTTTGGAGAGCAGGTGTGGTGGTGGGGAATGGCTGTGTTTGCTTGGAACCTGGGACATGGATGGGCTTTCATAGGGGCATTAGCCAATACCATGTGTTTGGCTTATGTCACTAAGCTTGTGGAGGACCGAATGTTGAAACAAGATAGCAGAGCAGAGGCGTTTAGGCTCTATCAGAAGACTACTTCCCTATGGATTCCTTGGTTCAAGTCATCTCCTTTAGGACTCAAATCTAAGGATGCTTGA

>Glyma.19g261600.1.p sequence-type=predicted peptide transcript=Glyma.19g261600.1 locus=Glyma.19g261600 ID=Glyma.19g261600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSVSYSNLKNAMIAFLVPLPSILFYLSFQSAISTPSSWSSLWTWCYHHPLLLANVLFFFNVNFLFWLIGLIQSSHWMIDPYWTVIPVMLVHYYSTHPLAQYQWWRSRIVTLLTWAWSVRLIHNYFRREKWQWGAREDWRFTDLSHRYGRHWWWASFFAIYVPQQVFLIGLSLPFYVIHSVNQPLSMWDLVAIVVCVSGIVTAYIADTQLYNFVSRKNKEVPILDKGLWYYSRHPNYFGEQVWWWGMAVFAWNLGHGWAFIGALANTMCLAYVTKLVEDRMLKQDSRAEAFRLYQKTTSLWIPWFKSSPLGLKSKDA*

>Glyma.19g261600.2.p sequence-type=predicted peptide transcript=Glyma.19g261600.2 locus=Glyma.19g261600 ID=Glyma.19g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIDPYWTVIPVMLVHYYSTHPLAQYQWWRSRIVTLLTWAWSVRLIHNYFRREKWQWGAREDWRFTDLSHRYGRHWWWASFFAIYVPQQVFLIGLSLPFYVIHSVNQPLSMWDLVAIVVCVSGIVTAYIADTQLYNFVSRKNKEVPILDKGLWYYSRHPNYFGEQVWWWGMAVFAWNLGHGWAFIGALANTMCLAYVTKLVEDRMLKQDSRAEAFRLYQKTTSLWIPWFKSSPLGLKSKDA*







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