Glyma.19g261600

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Report for Sequence Feature Glyma.19g261600

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50485021
stop:	50486522
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g261600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46890.1	AT	Protein of unknown function (DUF1295)	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0016627	GO-mf	oxidoreductase activity, acting on the CH-CH group of donors	EnsemblGenomes	N/A	IEA
GO:0016627	GO-mf	oxidoreductase activity, acting on the CH-CH group of donors	JGI	N/A	IEA
KOG4650	KOG	Predicted steroid reductase	JGI	N/A	IEA
PF06966	PFAM	Protein of unknown function (DUF1295)	JGI	N/A	IEA
GN7V-66704	SoyCyc9-rxn	cholestenone 5α-reductase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.19g261600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g261600 not represented in the dataset	Glyma.19g261600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.19g261600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g45120	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g261600

Limit To All Plant Sequences

>Glyma.19g261600.2 sequence-type=transcript locus=Glyma.19g261600 ID=Glyma.19g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATGGGCGTGGATATACAAACTTTGGGATCATAGAATCCCCTAATTAATCATTAAGTGTGTGGAATAACGGATCAGGTGCATGGCGTGGCTGTGTGGGGAGCCACAATTGTGCTGAACTCATTATTTGGAGGTTCTGCGCCTTCCATTTTGGAGAGCTATAAAAGTGGAAGCCATAACGAACGAACAGACGGAGCAGAGGACAAGATGGGTAGTGTGAGTTATAGCAATCTGAAGAACGCCATGATAGCATTCTTGGTCCCTCTACCCTCCATCCTATTCTACCTCTCATTCCAATCGGCCATTAGTACTCCTTCTTCTTGGTCTTCTCTGTGGACATGGTGCTATCACCACCCTCTGCTATTGGCCAATGTCCTTTTCTTCTTCAATGTCAATTTCCTCTTCTGGCTCATCGGCCTAATCCAATCCAGCCACTGGGTACACTTTCCACTTTTTCCTTCTTTTCTGCTTTGGTTTTTCAAATTGACACCTTTTGCTGTTGCTGTTGGTGCAGATGATTGACCCGTATTGGACAGTGATACCTGTGATGCTTGTTCATTACTATTCAACTCACCCTTTGGCACAGTATCAGTGGTGGAGGTCGAGGATCGTAACGTTGTTGACTTGGGCGTGGAGTGTTAGGCTGATCCACAACTACTTCAGGCGAGAAAAGTGGCAGTGGGGTGCCAGGGAGGATTGGCGTTTCACTGATTTGAGCCATCGCTATGGAAGGCATTGGTGGTGGGCTTCTTTCTTCGCCATCTACGTCCCTCAGCAGGTGTTTCTGATTGGATTGTCTCTTCCGTTCTATGTCATCCACTCGGTGAACCAGCCTCTGAGCATGTGGGACTTGGTAGCCATAGTTGTGTGTGTATCTGGCATTGTCACGGCATACATTGCTGATACTCAGCTTTACAACTTTGTGAGTAGAAAGAACAAGGAGGTCCCTATTCTTGACAAAGGGTTGTGGTATTATTCTCGGCATCCAAATTACTTTGGAGAGCAGGTGTGGTGGTGGGGAATGGCTGTGTTTGCTTGGAACCTGGGACATGGATGGGCTTTCATAGGGGCATTAGCCAATACCATGTGTTTGGCTTATGTCACTAAGCTTGTGGAGGACCGAATGTTGAAACAAGATAGCAGAGCAGAGGCGTTTAGGCTCTATCAGAAGACTACTTCCCTATGGATTCCTTGGTTCAAGTCATCTCCTTTAGGACTCAAATCTAAGGATGCTTGATTTTCTTTTTCCCCTTGTTCGTTAGTTGATTGTACCACCATCTTCTTAATTTTGCCTAGTTTGTTCGATTATGTAAGAGAGCCATGTGTGTGCTCCATGATTTTTGTATAATATAGCACTTTCCTATAGACTATCTCATTTTAATGCCACAAGCTATTAAAACCTTCAATATAAATATTTATTTATTTTAA

Coding sequences of Glyma.19g261600

Limit To All Plant Sequences

>Glyma.19g261600.1 sequence-type=CDS polypeptide=Glyma.19g261600.1.p locus=Glyma.19g261600 ID=Glyma.19g261600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAGTGTGAGTTATAGCAATCTGAAGAACGCCATGATAGCATTCTTGGTCCCTCTACCCTCCATCCTATTCTACCTCTCATTCCAATCGGCCATTAGTACTCCTTCTTCTTGGTCTTCTCTGTGGACATGGTGCTATCACCACCCTCTGCTATTGGCCAATGTCCTTTTCTTCTTCAATGTCAATTTCCTCTTCTGGCTCATCGGCCTAATCCAATCCAGCCACTGGATGATTGACCCGTATTGGACAGTGATACCTGTGATGCTTGTTCATTACTATTCAACTCACCCTTTGGCACAGTATCAGTGGTGGAGGTCGAGGATCGTAACGTTGTTGACTTGGGCGTGGAGTGTTAGGCTGATCCACAACTACTTCAGGCGAGAAAAGTGGCAGTGGGGTGCCAGGGAGGATTGGCGTTTCACTGATTTGAGCCATCGCTATGGAAGGCATTGGTGGTGGGCTTCTTTCTTCGCCATCTACGTCCCTCAGCAGGTGTTTCTGATTGGATTGTCTCTTCCGTTCTATGTCATCCACTCGGTGAACCAGCCTCTGAGCATGTGGGACTTGGTAGCCATAGTTGTGTGTGTATCTGGCATTGTCACGGCATACATTGCTGATACTCAGCTTTACAACTTTGTGAGTAGAAAGAACAAGGAGGTCCCTATTCTTGACAAAGGGTTGTGGTATTATTCTCGGCATCCAAATTACTTTGGAGAGCAGGTGTGGTGGTGGGGAATGGCTGTGTTTGCTTGGAACCTGGGACATGGATGGGCTTTCATAGGGGCATTAGCCAATACCATGTGTTTGGCTTATGTCACTAAGCTTGTGGAGGACCGAATGTTGAAACAAGATAGCAGAGCAGAGGCGTTTAGGCTCTATCAGAAGACTACTTCCCTATGGATTCCTTGGTTCAAGTCATCTCCTTTAGGACTCAAATCTAAGGATGCTTGA

>Glyma.19g261600.2 sequence-type=CDS polypeptide=Glyma.19g261600.2.p locus=Glyma.19g261600 ID=Glyma.19g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTGACCCGTATTGGACAGTGATACCTGTGATGCTTGTTCATTACTATTCAACTCACCCTTTGGCACAGTATCAGTGGTGGAGGTCGAGGATCGTAACGTTGTTGACTTGGGCGTGGAGTGTTAGGCTGATCCACAACTACTTCAGGCGAGAAAAGTGGCAGTGGGGTGCCAGGGAGGATTGGCGTTTCACTGATTTGAGCCATCGCTATGGAAGGCATTGGTGGTGGGCTTCTTTCTTCGCCATCTACGTCCCTCAGCAGGTGTTTCTGATTGGATTGTCTCTTCCGTTCTATGTCATCCACTCGGTGAACCAGCCTCTGAGCATGTGGGACTTGGTAGCCATAGTTGTGTGTGTATCTGGCATTGTCACGGCATACATTGCTGATACTCAGCTTTACAACTTTGTGAGTAGAAAGAACAAGGAGGTCCCTATTCTTGACAAAGGGTTGTGGTATTATTCTCGGCATCCAAATTACTTTGGAGAGCAGGTGTGGTGGTGGGGAATGGCTGTGTTTGCTTGGAACCTGGGACATGGATGGGCTTTCATAGGGGCATTAGCCAATACCATGTGTTTGGCTTATGTCACTAAGCTTGTGGAGGACCGAATGTTGAAACAAGATAGCAGAGCAGAGGCGTTTAGGCTCTATCAGAAGACTACTTCCCTATGGATTCCTTGGTTCAAGTCATCTCCTTTAGGACTCAAATCTAAGGATGCTTGA

Predicted protein sequences of Glyma.19g261600

Limit To All Plant Sequences

>Glyma.19g261600.1.p sequence-type=predicted peptide transcript=Glyma.19g261600.1 locus=Glyma.19g261600 ID=Glyma.19g261600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSVSYSNLKNAMIAFLVPLPSILFYLSFQSAISTPSSWSSLWTWCYHHPLLLANVLFFFNVNFLFWLIGLIQSSHWMIDPYWTVIPVMLVHYYSTHPLAQYQWWRSRIVTLLTWAWSVRLIHNYFRREKWQWGAREDWRFTDLSHRYGRHWWWASFFAIYVPQQVFLIGLSLPFYVIHSVNQPLSMWDLVAIVVCVSGIVTAYIADTQLYNFVSRKNKEVPILDKGLWYYSRHPNYFGEQVWWWGMAVFAWNLGHGWAFIGALANTMCLAYVTKLVEDRMLKQDSRAEAFRLYQKTTSLWIPWFKSSPLGLKSKDA*

>Glyma.19g261600.2.p sequence-type=predicted peptide transcript=Glyma.19g261600.2 locus=Glyma.19g261600 ID=Glyma.19g261600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIDPYWTVIPVMLVHYYSTHPLAQYQWWRSRIVTLLTWAWSVRLIHNYFRREKWQWGAREDWRFTDLSHRYGRHWWWASFFAIYVPQQVFLIGLSLPFYVIHSVNQPLSMWDLVAIVVCVSGIVTAYIADTQLYNFVSRKNKEVPILDKGLWYYSRHPNYFGEQVWWWGMAVFAWNLGHGWAFIGALANTMCLAYVTKLVEDRMLKQDSRAEAFRLYQKTTSLWIPWFKSSPLGLKSKDA*

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