Glyma.19g260100

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Report for Sequence Feature Glyma.19g260100

Feature Type:	gene_model
Chromosome:	Gm19
Start:	50354179
stop:	50358852
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g260100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01400.2	AT		JGI	N/A	IEA
GO:0000301	GO-bp	retrograde transport, vesicle recycling within Golgi	EnsemblGenomes	N/A	IEA
GO:0006890	GO-bp	retrograde vesicle-mediated transport, Golgi to ER	EnsemblGenomes	N/A	IEA
GO:0007030	GO-bp	Golgi organization	EnsemblGenomes	N/A	IEA
GO:0048213	GO-bp	Golgi vesicle prefusion complex stabilization	EnsemblGenomes	N/A	IEA
GO:0017119	GO-cc	Golgi transport complex	EnsemblGenomes	N/A	IEA
KOG0412	KOG	Golgi transport complex COD1 protein	JGI	N/A	IEA
PTHR24016	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24016:SF19	Panther		JGI	N/A	IEA
PF08318	PFAM	COG4 transport protein	JGI	N/A	IEA

Expression Patterns of Glyma.19g260100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g260100 not represented in the dataset	Glyma.19g260100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g260100

Paralog	Evidence	Comments
Glyma.03g261100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g260100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g44940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g260100

Limit To All Plant Sequences

>Glyma.19g260100.2 sequence-type=transcript locus=Glyma.19g260100 ID=Glyma.19g260100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTAATCATTAGTTATAGAGTGTAATTCACACTCAAATAAAAACGTTCGTCCCTTTTTAGTTGTTGTTTCAGATCTGATCTGAATGTGATTGTAGCTTCCGCGATTGATGATGGGGGCTACTCCAGAGGCGAACGGAAATGTCGCGGACGAAGAAAACGGGAGCAACGTCTGTGGCTCAATCGATTTCGGCACGGCGGAGGCCGTCGAATACGTTCGCTCCCTCACCGACGTTGGCGCCATGACGCGCCTCCTTCACGAATGCATCGCTCACCAGAGAGCGGTGGACGTTGAACTCGACGAGCTTCTGTCGCAGCGCACCGacctcgaccgccacctcctccagctccagcgctcctccgacgtcctcgacatcgtcaactccgacgccgactacatgctctccaacgtcgcctccacctccgacctcGCCGACCAGGTCAGCCGCAAGGTCCGCGAGCTTGATCTAGCCCAGTCGCGCGTCCGCAACACGCTCCTCCGCATCGACGCCATCGTCGAACGCGCCAACTCCCTCGAAGGCGTCCACCGCGCCCTCGAGGCCGAGGACTACGAGTCCGCCGCCCTCTACGTCCAGACTTTCCTCCAGATCGACGCCCAGTACAAGGATTCCGGCTCCGATCAGCTTCAGAGGGATCGCTTGTTGGCTGCCAAGAAGCAGTTGGAAGGAATTGTAAGGAAGAAGCTCTCCGCCGCCGTCGATCAGCGCGACCACCCCGCCATTCTCAGATTCATTCGGCTCTTCACACCACTGGGTGTGGAGGAGGAGGGTTTGCAGGTGTATGTTGGGTACTTGAAGAAGGTGGTTGCAATGAGGTCGAGAATGGAGTTTGAGCAGTTGGTAGAGATGATGGATCAGCAGAATGTGAATTTTGTTAGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAGGAGAATAGTGAGATCTTGAGTGGTCTTTGTGGGGAGGATGGTATTGTGTATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGCGGTTCGGTGATTTTGAACAAGTACATGGAGTATAGGCAGTTGGCTAAGTTGTCCTCTGAGATAAATGCACACAACACCAATTTGCTTGCTGTTGGAGGAGGTCCTGAGGGTCCTGACCCACGGGAGGTTGAGTTGTATTTGGAAGAGATTCTCTCCCTTATGCAGCTTGGTGAGGATTACACTGAGTTCATGATTTCCAAGATCAAAGCACTTACTTCTGTTGACCCCGAATTGCTTCCTCGCGCCACCAAGGCTTTCCGAAGTGGCAGTTTCAGCAAGGTGGCACAGGATTTAACCGGCTTTTACGTCATTTTGGAGGGATTTTTCATGGTGGAGAATGTTAGGAAGGCGATAAAGATCGATGAACACATGCCTGACAGCCTTACTTCTTCTATGGTGGATGATGTGTTTTATGTATTGCAGAGTTGCCTGCGGAGGGCAATATCCACTTCCAATATCAGTTCTGTTGTCGCAGTTTTGAGTGGTGCTAGTAGTTTGCTCGGTAATGAATATCATGAAGCTTTGCAGCACAAAACTAGAGAGCCAAACCTTGGTGCAAAGTTGTTCTTTGGTGGTGTTGGCGTGCAAAAAACAGGGACCGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAATATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTATTTCCTGCACCAGCTGATCGAGAAAAGGTAAAATCTTGTTTGACTGAGTTGGCAGATAGTAGCAATGCTTTCAAGCAAGCTTTGAATGCTGGCATAGAACAACTTGTGGCAACCATTACACCTCGCATTAGACCGTTATTAGACAGTGTAGGAACAATCAGCTATGAGCTTTCAGAGGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCTATGCCGTTGAGTCAAATGTGGCATGGCTGCAGCCACTAATGACTGCTAACAATTATGACACGTTTGTTCATTTGATTATTGACTTCATTGTGAAAAGGCTAGAAGTCATTATGATGCAGAAAAGATTTAGTCAGCTAGGTGGTCTTCAGCTTGACCGAGATGCTAGAGCTTTGGTAAGCCGTTTCAGTGTCATGACACAGAGAACTGTTAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTATGACCTGGAGATTAACTCCAGCAGAGGTTAGGCGTGTATTGGGTCTGCGAGTTGATTTTAAATCAGAAGCAATAGTTGCTCTGAAGTTGTAATATCCGTTTATATCGTCTCTTCACAttctttttttttttgttctactttttttttaattttGTCTGATAAGTATTACATCTTCATTCTTACTATTTTTGCCTTTTTGGTGCTCGGGAAGTTAACATACAGTTCCATTGTGCGATTTGCATAAACAAAAGAATAAGCAAGTGTATTATTCAGATTTGCCACCCCAGAGGCCAAGATAGCACGCTTATATAAAGAGCATGATGTGTGAAACGGTCTTTGTTCCTCATTAGCCACTTCCTAATTTTTGTATTTTTATTTTGTAAATCATTTTTGAGAGATTA

Coding sequences of Glyma.19g260100

Limit To All Plant Sequences

>Glyma.19g260100.1 sequence-type=CDS polypeptide=Glyma.19g260100.1.p locus=Glyma.19g260100 ID=Glyma.19g260100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGATTAACGCTTCCGCGATTGATGATGGGGGCTACTCCAGAGGCGAACGGAAATGTCGCGGACGAAGAAAACGGGAGCAACGTCTGTGGCTCAATCGATTTCGGCACGGCGGAGGCCGTCGAATACGTTCGCTCCCTCACCGACGTTGGCGCCATGACGCGCCTCCTTCACGAATGCATCGCTCACCAGAGAGCGGTGGACGTTGAACTCGACGAGCTTCTGTCGCAGCGCACCGACCTCGACCGCCACCTCCTCCAGCTCCAGCGCTCCTCCGACGTCCTCGACATCGTCAACTCCGACGCCGACTACATGCTCTCCAACGTCGCCTCCACCTCCGACCTCGCCGACCAGGTCAGCCGCAAGGTCCGCGAGCTTGATCTAGCCCAGTCGCGCGTCCGCAACACGCTCCTCCGCATCGACGCCATCGTCGAACGCGCCAACTCCCTCGAAGGCGTCCACCGCGCCCTCGAGGCCGAGGACTACGAGTCCGCCGCCCTCTACGTCCAGACTTTCCTCCAGATCGACGCCCAGTACAAGGATTCCGGCTCCGATCAGCTTCAGAGGGATCGCTTGTTGGCTGCCAAGAAGCAGTTGGAAGGAATTGTAAGGAAGAAGCTCTCCGCCGCCGTCGATCAGCGCGACCACCCCGCCATTCTCAGATTCATTCGGCTCTTCACACCACTGGGTGTGGAGGAGGAGGGTTTGCAGGTGTATGTTGGGTACTTGAAGAAGGTGGTTGCAATGAGGTCGAGAATGGAGTTTGAGCAGTTGGTAGAGATGATGGATCAGCAGAATGTGAATTTTGTTAGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAGGAGAATAGTGAGATCTTGAGTGGTCTTTGTGGGGAGGATGGTATTGTGTATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGCGGTTCGGTGATTTTGAACAAGTACATGGAGTATAGGCAGTTGGCTAAGTTGTCCTCTGAGATAAATGCACACAACACCAATTTGCTTGCTGTTGGAGGAGGTCCTGAGGGTCCTGACCCACGGGAGGTTGAGTTGTATTTGGAAGAGATTCTCTCCCTTATGCAGCTTGGTGAGGATTACACTGAGTTCATGATTTCCAAGATCAAAGCACTTACTTCTGTTGACCCCGAATTGCTTCCTCGCGCCACCAAGGCTTTCCGAAGTGGCAGTTTCAGCAAGGTGGCACAGGATTTAACCGGCTTTTACGTCATTTTGGAGGGATTTTTCATGGTGGAGAATGTTAGGAAGGCGATAAAGATCGATGAACACATGCCTGACAGCCTTACTTCTTCTATGGTGGATGATGTGTTTTATGTATTGCAGAGTTGCCTGCGGAGGGCAATATCCACTTCCAATATCAGTTCTGTTGTCGCAGTTTTGAGTGGTGCTAGTAGTTTGCTCGGTAATGAATATCATGAAGCTTTGCAGCACAAAACTAGAGAGCCAAACCTTGGTGCAAAGTTGTTCTTTGGTGGTGTTGGCGTGCAAAAAACAGGGACCGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAATATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTATTTCCTGCACCAGCTGATCGAGAAAAGGTAAAATCTTGTTTGACTGAGTTGGCAGATAGTAGCAATGCTTTCAAGCAAGCTTTGAATGCTGGCATAGAACAACTTGTGGCAACCATTACACCTCGCATTAGACCGTTATTAGACAGTGTAGGAACAATCAGCTATGAGCTTTCAGAGGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCTATGCCGTTGAGTCAAATGTGGCATGGCTGCAGCCACTAATGACTGCTAACAATTATGACACGTTTGTTCATTTGATTATTGACTTCATTGTGAAAAGGCTAGAAGTCATTATGATGCAGAAAAGATTTAGTCAGCTAGGTGGTCTTCAGCTTGACCGAGATGCTAGAGCTTTGGTAAGCCGTTTCAGTGTCATGACACAGAGAACTGTTAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTATGACCTGGAGATTAACTCCAGCAGAGGTTAGGCGTGTATTGGGTCTGCGAGTTGATTTTAAATCAGAAGCAATAGTTGCTCTGAAGTTGTAA

>Glyma.19g260100.2 sequence-type=CDS polypeptide=Glyma.19g260100.2.p locus=Glyma.19g260100 ID=Glyma.19g260100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGGGGCTACTCCAGAGGCGAACGGAAATGTCGCGGACGAAGAAAACGGGAGCAACGTCTGTGGCTCAATCGATTTCGGCACGGCGGAGGCCGTCGAATACGTTCGCTCCCTCACCGACGTTGGCGCCATGACGCGCCTCCTTCACGAATGCATCGCTCACCAGAGAGCGGTGGACGTTGAACTCGACGAGCTTCTGTCGCAGCGCACCGACCTCGACCGCCACCTCCTCCAGCTCCAGCGCTCCTCCGACGTCCTCGACATCGTCAACTCCGACGCCGACTACATGCTCTCCAACGTCGCCTCCACCTCCGACCTCGCCGACCAGGTCAGCCGCAAGGTCCGCGAGCTTGATCTAGCCCAGTCGCGCGTCCGCAACACGCTCCTCCGCATCGACGCCATCGTCGAACGCGCCAACTCCCTCGAAGGCGTCCACCGCGCCCTCGAGGCCGAGGACTACGAGTCCGCCGCCCTCTACGTCCAGACTTTCCTCCAGATCGACGCCCAGTACAAGGATTCCGGCTCCGATCAGCTTCAGAGGGATCGCTTGTTGGCTGCCAAGAAGCAGTTGGAAGGAATTGTAAGGAAGAAGCTCTCCGCCGCCGTCGATCAGCGCGACCACCCCGCCATTCTCAGATTCATTCGGCTCTTCACACCACTGGGTGTGGAGGAGGAGGGTTTGCAGGTGTATGTTGGGTACTTGAAGAAGGTGGTTGCAATGAGGTCGAGAATGGAGTTTGAGCAGTTGGTAGAGATGATGGATCAGCAGAATGTGAATTTTGTTAGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAGGAGAATAGTGAGATCTTGAGTGGTCTTTGTGGGGAGGATGGTATTGTGTATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGCGGTTCGGTGATTTTGAACAAGTACATGGAGTATAGGCAGTTGGCTAAGTTGTCCTCTGAGATAAATGCACACAACACCAATTTGCTTGCTGTTGGAGGAGGTCCTGAGGGTCCTGACCCACGGGAGGTTGAGTTGTATTTGGAAGAGATTCTCTCCCTTATGCAGCTTGGTGAGGATTACACTGAGTTCATGATTTCCAAGATCAAAGCACTTACTTCTGTTGACCCCGAATTGCTTCCTCGCGCCACCAAGGCTTTCCGAAGTGGCAGTTTCAGCAAGGTGGCACAGGATTTAACCGGCTTTTACGTCATTTTGGAGGGATTTTTCATGGTGGAGAATGTTAGGAAGGCGATAAAGATCGATGAACACATGCCTGACAGCCTTACTTCTTCTATGGTGGATGATGTGTTTTATGTATTGCAGAGTTGCCTGCGGAGGGCAATATCCACTTCCAATATCAGTTCTGTTGTCGCAGTTTTGAGTGGTGCTAGTAGTTTGCTCGGTAATGAATATCATGAAGCTTTGCAGCACAAAACTAGAGAGCCAAACCTTGGTGCAAAGTTGTTCTTTGGTGGTGTTGGCGTGCAAAAAACAGGGACCGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAATATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTATTTCCTGCACCAGCTGATCGAGAAAAGGTAAAATCTTGTTTGACTGAGTTGGCAGATAGTAGCAATGCTTTCAAGCAAGCTTTGAATGCTGGCATAGAACAACTTGTGGCAACCATTACACCTCGCATTAGACCGTTATTAGACAGTGTAGGAACAATCAGCTATGAGCTTTCAGAGGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCTATGCCGTTGAGTCAAATGTGGCATGGCTGCAGCCACTAATGACTGCTAACAATTATGACACGTTTGTTCATTTGATTATTGACTTCATTGTGAAAAGGCTAGAAGTCATTATGATGCAGAAAAGATTTAGTCAGCTAGGTGGTCTTCAGCTTGACCGAGATGCTAGAGCTTTGGTAAGCCGTTTCAGTGTCATGACACAGAGAACTGTTAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTATGACCTGGAGATTAACTCCAGCAGAGGTTAGGCGTGTATTGGGTCTGCGAGTTGATTTTAAATCAGAAGCAATAGTTGCTCTGAAGTTGTAA

Predicted protein sequences of Glyma.19g260100

Limit To All Plant Sequences

>Glyma.19g260100.1.p sequence-type=predicted peptide transcript=Glyma.19g260100.1 locus=Glyma.19g260100 ID=Glyma.19g260100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRLTLPRLMMGATPEANGNVADEENGSNVCGSIDFGTAEAVEYVRSLTDVGAMTRLLHECIAHQRAVDVELDELLSQRTDLDRHLLQLQRSSDVLDIVNSDADYMLSNVASTSDLADQVSRKVRELDLAQSRVRNTLLRIDAIVERANSLEGVHRALEAEDYESAALYVQTFLQIDAQYKDSGSDQLQRDRLLAAKKQLEGIVRKKLSAAVDQRDHPAILRFIRLFTPLGVEEEGLQVYVGYLKKVVAMRSRMEFEQLVEMMDQQNVNFVRCLTNLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRQLAKLSSEINAHNTNLLAVGGGPEGPDPREVELYLEEILSLMQLGEDYTEFMISKIKALTSVDPELLPRATKAFRSGSFSKVAQDLTGFYVILEGFFMVENVRKAIKIDEHMPDSLTSSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLGNEYHEALQHKTREPNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPAPADREKVKSCLTELADSSNAFKQALNAGIEQLVATITPRIRPLLDSVGTISYELSEAEYADNEVNDPWVQRLLYAVESNVAWLQPLMTANNYDTFVHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSRFSVMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKSEAIVALKL*

>Glyma.19g260100.2.p sequence-type=predicted peptide transcript=Glyma.19g260100.2 locus=Glyma.19g260100 ID=Glyma.19g260100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMGATPEANGNVADEENGSNVCGSIDFGTAEAVEYVRSLTDVGAMTRLLHECIAHQRAVDVELDELLSQRTDLDRHLLQLQRSSDVLDIVNSDADYMLSNVASTSDLADQVSRKVRELDLAQSRVRNTLLRIDAIVERANSLEGVHRALEAEDYESAALYVQTFLQIDAQYKDSGSDQLQRDRLLAAKKQLEGIVRKKLSAAVDQRDHPAILRFIRLFTPLGVEEEGLQVYVGYLKKVVAMRSRMEFEQLVEMMDQQNVNFVRCLTNLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRQLAKLSSEINAHNTNLLAVGGGPEGPDPREVELYLEEILSLMQLGEDYTEFMISKIKALTSVDPELLPRATKAFRSGSFSKVAQDLTGFYVILEGFFMVENVRKAIKIDEHMPDSLTSSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLGNEYHEALQHKTREPNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPAPADREKVKSCLTELADSSNAFKQALNAGIEQLVATITPRIRPLLDSVGTISYELSEAEYADNEVNDPWVQRLLYAVESNVAWLQPLMTANNYDTFVHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSRFSVMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKSEAIVALKL*

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