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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00980.1 | AT | zinc knuckle (CCHC-type) family protein | JGI | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | JGI | N/A | IEA |
| GO:0060261 | GO-bp | positive regulation of transcription initiation from RNA polymerase II promoter | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005667 | GO-cc | transcription factor complex | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003713 | GO-mf | transcription coactivator activity | EnsemblGenomes | N/A | IEA |
| GO:0003713 | GO-mf | transcription coactivator activity | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| KOG2712 | KOG | Transcriptional coactivator | JGI | N/A | IEA |
| PTHR11439 | Panther | GAG-POL-RELATED RETROTRANSPOSON | JGI | N/A | IEA |
| PTHR11439:SF93 | Panther | JGI | N/A | IEA | |
| PF02229 | PFAM | Transcriptional Coactivator p15 (PC4) | JGI | N/A | IEA |
| PF08766 | PFAM | DEK C terminal domain | JGI | N/A | IEA |
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Glyma.19g256500 not represented in the dataset |
Glyma.19g256500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g258000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g44551 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g256500.1 sequence-type=CDS polypeptide=Glyma.19g256500.1.p locus=Glyma.19g256500 ID=Glyma.19g256500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATATGTTCTTGTTCTCGAATAAAAGGTGTTTCACCCCTCAGTGTTTGGTTTCTGTGCAACGTGACATTGGGGTTTTTCATTTTATTTTATTTTGCAATGGAAACGGAAACCCGACGGAAAGTGGAGGAGATGGTGTTGGATATATTGAAGAAATCCAACATTGAAGAAGCCACTGAGTTCACCATCCGAGTCGCTGCCTCGGAGCGTCTCGGCATCGACCTCTCCGACTCTCCCAGTAGGCACTTCGTCAGAACCGTCGTTGAGTCTTATCTTCTCTCCGTTGCGGCCAATGAAATCTCCAAAGACGCAGAGAAGAAGGAGAACGAAGATATTGCCGCCAAAAACGACGACGATGTGAAGAAGGGAGATGTCGTTGCGGTGCCCAAACTGAAGAGGGATGATCCCGAACGCGTTATTTGTCAACTGTCCAGCAGGAGGAACTTGGCGGTGAAACATTTCAAAGGGACAACCCTAGTCTCAATTAGGGAATTCTATATGAAAGACGGAAAACTACTTCCTGGTTCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCGACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATAAAAAAGATGGAAGGAAGGATAAGATTGGAGCCTAATGGTAAGCAAAATGGAGATGCGTCAAATTCAGCTGTTGATGTTGCTCTTGAGCCCAATGGTAAGCAAAATGGAGATGCGTCAAATTCAGTTGTTGATGTTGCTCCACTTGAGCCTCATGGTAAGCAAAATGGAGATGCATCAAATTCTGTTGTTGATGTTGCTGCTCTTGAGCCTGTTGTCCCTATTGAGGTCATCCGATTGGATGGGAAGAATTTCCAATCCTGGGCTCGGCAGATGGAATTACTCTTGAAACAATTAAAGGTTGACTATGTGCTAGATGAACCATGCCCGAACCCTACACTAGGGGAAAGTGCCAAGGCTGAAGACATTGCCACAGCCAAGGCTGCAGAAAGGAGATGGCTGAACGATGATTTGACATGTCATCGGAATATCTTGAGCCATTTATCTGATCCTTTGTATAACCTGTATGCGAACAGAAAATTGAGTGCTAAGGATTTATGGGAAGAATTAAAACTGGTTTATCTGTACGAGGAATTTGGAACCAAAAGATATCATGTGAAAAAGTATCTTGAATTTCAGATGGTTGAGGAGAAAGCAGTTATTGAACAAATCAGAGAATTAAATGGCATGGCAGATTCTATTGCTGCTGCTGGGATGTTTATCGATGACAACTTTCATGTTAGTGCCATCATTTCAAAGCTTCCACCATCGTGGAAGGACTTTTGCATCAAGTTAATGCGTGAGGAATATCTACCTTACCGGAAGTTAATGGAACGCATACAGATAGAGGAAGAATACCGCTATGGAGTAAAACGAGTGGTTGAACATTCTAACAGTATGGAAGGATATCACCAGGCCTATAATGGTGGACATAGGAGGGCTGACTATAAGCCATTGGGAATGTGTAGGAATAGGTCAGAAATTAATGCCAGGAGCGTACCCTGTAGTGTATGTGGCAAGAGGGGACATCTTTCTAAACATTGCTGGAGAAGAAATGACAAACAAACTAATGAGAGGAAATCAGAAGAGGATGAGCGTATACCCACATAA
>Glyma.19g256500.1.p sequence-type=predicted peptide transcript=Glyma.19g256500.1 locus=Glyma.19g256500 ID=Glyma.19g256500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MICSCSRIKGVSPLSVWFLCNVTLGFFILFYFAMETETRRKVEEMVLDILKKSNIEEATEFTIRVAASERLGIDLSDSPSRHFVRTVVESYLLSVAANEISKDAEKKENEDIAAKNDDDVKKGDVVAVPKLKRDDPERVICQLSSRRNLAVKHFKGTTLVSIREFYMKDGKLLPGSKGISLSSEQWSTFKKSVPAIEEAIKKMEGRIRLEPNGKQNGDASNSAVDVALEPNGKQNGDASNSVVDVAPLEPHGKQNGDASNSVVDVAALEPVVPIEVIRLDGKNFQSWARQMELLLKQLKVDYVLDEPCPNPTLGESAKAEDIATAKAAERRWLNDDLTCHRNILSHLSDPLYNLYANRKLSAKDLWEELKLVYLYEEFGTKRYHVKKYLEFQMVEEKAVIEQIRELNGMADSIAAAGMFIDDNFHVSAIISKLPPSWKDFCIKLMREEYLPYRKLMERIQIEEEYRYGVKRVVEHSNSMEGYHQAYNGGHRRADYKPLGMCRNRSEINARSVPCSVCGKRGHLSKHCWRRNDKQTNERKSEEDERIPT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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