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Report for Sequence Feature Glyma.19g254000

Feature Type:gene_model
Chromosome:Gm19
Start:49896459
stop:49901498
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g254000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46370.4AT Auxin-responsive GH3 family protein JGI N/AIEA
GO:0009611GO-bp response to wounding EnsemblGenomesN/AIEA
GO:0009694GO-bp jasmonic acid metabolic process EnsemblGenomesN/AIEA
GO:0009864GO-bp induced systemic resistance, jasmonic acid mediated signaling pathway EnsemblGenomesN/AIEA
GO:0080123GO-mf jasmonate-amino synthetase activity EnsemblGenomesN/AIEA
PF03321PFAM GH3 auxin-responsive promoter JGI N/AIEA
PWY-6220SoyCyc9 jasmonoyl-amino acid conjugates biosynthesis I Plant Metabolic Network ISS
PWY-6233SoyCyc9 jasmonoyl-amino acid conjugates biosynthesis II Plant Metabolic Network ISS
PWY-6234SoyCyc9 superpathway of jasmonoyl-amino acid conjugates biosynthesis Plant Metabolic Network ISS
GN7V-62462SoyCyc9-rxn jasmonyl-isoleucine synthetase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g254000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g254000
ParalogEvidenceComments
Glyma.03g256200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g254000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g44310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g254000
>Glyma.19g254000.1 sequence-type=CDS polypeptide=Glyma.19g254000.1.p locus=Glyma.19g254000 ID=Glyma.19g254000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGAGAAAGTGGGGGAGTTTAACATGGATAAAGTTATACAAGAGTTTGAATTATTGACACGGGATGCAGAAAGGGTTCAGAGGGAAACACTGAAGAGGATTTTGGAGGATAACGCATCAGCAGAGTACTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCTGAGAGTTTCAAGGCCTGTGTTCCACTGGTCACCCACAAAGAATTGGAACCTTATATCTACAGAATTATTGATGGTGATGCTTCTCCTATTCTCACTGGAAAACCCATCACAACCATGTCATTAAGTTCTGGCACTACCCAGGGGAAGCCAAAATATGTACCTTGGAATGATGAATTGTATGAAACCACAATGCAGATATACCTGACCTCTTTTGTCTTTAGAAACAGGGAGTTTCCTATAAAAAATGGGAAGGCTTTAAGCTTTATATACGGTAGCAAACAGTTGAAAACAAAGGGGGGTCTGGCGGCTAGAACTGCCACAAGCAACGTGTTCTGTAGTGCTGGTTACAAGTGTGCAATGAGGGCACTCCAATCCCAATGCTGCAGCCCGGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTGTACTGCCATCTGTTGTGTGGTCTGATTTTCCGGGAGGAAGTTCAGTTTGTGTCTTCCACATTTGCACATAGCATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGTAACGATATCAGAGAAGGGGTTCTCACCAGAAATGTCACCATTCCTTCCATTCGAATGGCCATGTCTAAACTGCTCAAACCAAACCCTGAATTAGCCAACACGATCCACCAAAAATGCAGGGGATTGAGCAACTGGTACGGGTTAATACCAGAGCTTTTTCCTAATGCAAAGTATATTTATGGCATCATGACTGGGTCGATGGAGCCTTATTTGAAAAAAATGAGGCATTATGCTGGGGAGCTGCCTTTGTTGACTGCTGACTACGGATCTTCTGAGGGATGGATAGCAGCTAATGTGAACCCACAACTTCCTCCTGAGTATGCCACTTATGCTGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTCTCAGAGTTTGAGAACACCAAGGGTGAACCTGATTTCCTCTGTGTTGATCCTAAGCCCATGGGCCTGACTGAAGTCAAGGTTGGTGAAGAGTATGAAATTGTTATGACGAATCCAGCAGGTTTATACCGGTATAGATTAGGGGATGTGGTGAAGGTTATGGGATTCCACAATTCAACTCCAGAACTCAAGTTTATTCGAAGGAGCAGTCTTCTGCTCAACATTAACATCGACAAGAACACTGAGAAGGATTTACAATTAGCCGTGGAAGCTGCAGGGAAGTTGCTAGCAGAGGAGAAACTGGAAGTAGTTGACTTCAGTAGCCAGGTTGATTTATCCAAAGAACCAGGGCACTATGTCATCTTCTGGGAAATCAGCGGAGAAGCGAGCCAAGAACTACTCCTCGAATGCTGTAACTGTTTGGACAAGTCTTTCGTTGATGCAGGCTACACCAGTTCGCGCAAAGTGAACTGCATTGGTGCCCTCGAACTACGACTTGTTCGGAGAGGAACATTCCAGAAGATTCTTGATCATTACCTAGGACTAGGAACCGCTGTTAGTCAATACAAGACACCAAGATGTGTTGGTCCTACAAACACCAGAGTTTTGCAAATCTTGAGTGAAAATGTTGTGAACAACTATCTCAGTACCGCTTTCAATTGA
Predicted protein sequences of Glyma.19g254000
>Glyma.19g254000.1.p sequence-type=predicted peptide transcript=Glyma.19g254000.1 locus=Glyma.19g254000 ID=Glyma.19g254000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEKVGEFNMDKVIQEFELLTRDAERVQRETLKRILEDNASAEYLQSLGLNGRTDPESFKACVPLVTHKELEPYIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELYETTMQIYLTSFVFRNREFPIKNGKALSFIYGSKQLKTKGGLAARTATSNVFCSAGYKCAMRALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFREEVQFVSSTFAHSIVHAFRTFEQVWEELCNDIREGVLTRNVTIPSIRMAMSKLLKPNPELANTIHQKCRGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKMRHYAGELPLLTADYGSSEGWIAANVNPQLPPEYATYAVLPHIGYFEFIPLSEFENTKGEPDFLCVDPKPMGLTEVKVGEEYEIVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFIRRSSLLLNINIDKNTEKDLQLAVEAAGKLLAEEKLEVVDFSSQVDLSKEPGHYVIFWEISGEASQELLLECCNCLDKSFVDAGYTSSRKVNCIGALELRLVRRGTFQKILDHYLGLGTAVSQYKTPRCVGPTNTRVLQILSENVVNNYLSTAFN*






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