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Report for Sequence Feature Glyma.19g253300

Feature Type:gene_model
Chromosome:Gm19
Start:49856942
stop:49864005
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g253300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61650.1AT gamma-tubulin JGI N/AIEA
GO:0006184GO-bp GTP catabolic process JGI N/AIEA
GO:0007017GO-bp microtubule-based process EnsemblGenomesN/AIEA
GO:0007020GO-bp microtubule nucleation EnsemblGenomesN/AIEA
GO:0031122GO-bp cytoplasmic microtubule organization EnsemblGenomesN/AIEA
GO:0051258GO-bp protein polymerization JGI N/AIEA
GO:0000930GO-cc gamma-tubulin complex EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG1374 KOG Gamma tubulin JGI N/AIEA
PTHR11588Panther TUBULIN JGI N/AIEA
PTHR11588:SF7Panther TUBULIN GAMMA CHAIN JGI N/AIEA
PF00091PFAM Tubulin/FtsZ family, GTPase domain JGI N/AIEA
PF03953PFAM Tubulin C-terminal domain JGI N/AIEA
GN7V-65908SoyCyc9-rxn purine-nucleoside phosphorylase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g253300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g253300 not represented in the dataset
Glyma.19g253300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g253300
ParalogEvidenceComments
Glyma.03g255800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g253300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g44260 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g253300
>Glyma.19g253300.2 sequence-type=transcript locus=Glyma.19g253300 ID=Glyma.19g253300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTTAAGAGTAAGCACGAGAAGAAAATAGAAATCTAAAGATCACAACGAGTTCCTATTACATGCGAAATATCCGAAACAGCAAAAAGACTAGTTTTGAATATCCGAAGCAGAGTAAATAAGAAGTTATTTAGGTCTTCCCCGCCACCAAACCCTAGCTAGCGCTGGAAAAATGCCGAGGGAAATCATCACTCTCCAGGTTGGCCAATGTGGGAATCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAACACGGCATCAGCAAAGAAGGCATCCTCGAAGACTTCGCCACTCAGGGGGGTGACCGTAAAGACGTGTTCTTCTACCAAGCTGATGACCAGCATTATATACCACGGGCTCTCCTGATTGACTTGGAGCCAAGAGTGATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCACGGAGGTGGTGCTGGAAACAATTGGGCCAGTGGATACGATCAGGGACAACATGTTGAAGAAGAAATAATGGACATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCAGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACTCTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACTAGTGATGTGGTGGTCCAACCATACAATTCACTTTTAACACTCAAGAGATTGACACTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGGCTTCATTTATCAAATCCATCATTTGCTCAAACAAATTCCTTAGTTTCTACAGTTATGTCTGCCAGCACAACAACTCTTCGTTATCCAGGGTACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGCTATACACCTTTGACTGTGGAACGCCAGGCTAATTTAATTCGTAAGACTACTGTACTTGATGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCTTCTTATGCTCGGACAAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAACTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCAAGGAAGTCTCCTTATGTTCAAACTGCACATAGGGTCAGTGGCCTTATGCTGGCAAGTCATACTAGCATCCGTCACCTTTTCAGTAAAACATTGAGCCAGTATGAGAAGTTGAGAAAGAAACAAGCCTTTATAGACGCCTACAGGAAGTTTCCTATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGGGACATAATTGAGACTTTGGTTGATGAATACAAGGCCTGTGAGTCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAACAACATGCTAACAGGAGAAGGCAATGCTACAGGATCATTGGATCCAAATTCAGTAGCGTGAAAAAACCAAGTACCACAAGGAAAGCATAAAAAAGGAAAGGGTTTTTCTGAAAGATCAACAAGGTTTCTTTTGAAGTTTTTAACTTTTTTGGGGTGTGAGATGGTTTGCGGTGTGATTAGTTTTGTTTGTATTTGTTTGCTAATCGTTTGTGCCCAAGGGAAGGGAGATTGAGTACAGAATCTTTCTGTATTGATTCGTTTTTAGCAATGTATATGGTTGGTTGGTCATTGAAATGTAGAGAATTAGGCAAACCTAGTTTCTTTATCTGTGGATCTGACGTGTTTGTTAGGTGATATTGCTGTTTGGCATGAATTGAAATTGAAATATTTAAATTTAAATTGATGTGGGCATAGATTTACACGATTCATGTGGTGCAGAGACTCAC
Coding sequences of Glyma.19g253300
>Glyma.19g253300.1 sequence-type=CDS polypeptide=Glyma.19g253300.1.p locus=Glyma.19g253300 ID=Glyma.19g253300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGAGGGAAATCATCACTCTCCAGGTTGGCCAATGTGGGAATCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAACACGGCATCAGCAAAGAAGGCATCCTCGAAGACTTCGCCACTCAGGGGGGTGACCGTAAAGACGTGTTCTTCTACCAAGCTGATGACCAGCATTATATACCACGGGCTCTCCTGATTGACTTGGAGCCAAGAGTGATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCACGGAGGTGGTGCTGGAAACAATTGGGCCAGTGGATACGATCAGGGACAACATGTTGAAGAAGAAATAATGGACATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCAGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACTCTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACTAGTGATGTGGTGGTCCAACCATACAATTCACTTTTAACACTCAAGAGATTGACACTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGGCTTCATTTATCAAATCCATCATTTGCTCAAACAAATTCCTTAGTTTCTACAGTTATGTCTGCCAGCACAACAACTCTTCGTTATCCAGGGTACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGCTATACACCTTTGACTGTGGAACGCCAGGCTAATTTAATTCGTAAGACTACTGTACTTGATGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCTTCTTATGCTCGGACAAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAACTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCAAGGAAGTCTCCTTATGTTCAAACTGCACATAGGGTCAGTGGCCTTATGCTGGCAAGTCATACTAGCATCCGTCACCTTTTCAGTAAAACATTGAGCCAGTATGAGAAGTTGAGAAAGAAACAAGCCTTTATAGACGCCTACAGGAAGTTTCCTATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGGGACATAATTGAGACTTTGGTTGATGAATACAAGGCCTGTGAGTCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAACAACATGCTAACAGGAGAAGGCAATGCTACAGGATCATTGGATCCAAATTCAGTAGCGTGA

>Glyma.19g253300.2 sequence-type=CDS polypeptide=Glyma.19g253300.2.p locus=Glyma.19g253300 ID=Glyma.19g253300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGAGGGAAATCATCACTCTCCAGGTTGGCCAATGTGGGAATCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAACACGGCATCAGCAAAGAAGGCATCCTCGAAGACTTCGCCACTCAGGGGGGTGACCGTAAAGACGTGTTCTTCTACCAAGCTGATGACCAGCATTATATACCACGGGCTCTCCTGATTGACTTGGAGCCAAGAGTGATTAATGGAATTCAAAATAGTGACTACCGAAATCTCTACAATCATGAGAACATCTTTGTCTCAGATCACGGAGGTGGTGCTGGAAACAATTGGGCCAGTGGATACGATCAGGGACAACATGTTGAAGAAGAAATAATGGACATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTATGTCATTCAATTGCAGGAGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGACTCTGAATGACCGCTACAGCAAAAAACTGGTTCAGACATACAGTGTGTTTCCTAACCAAATGGAGACTAGTGATGTGGTGGTCCAACCATACAATTCACTTTTAACACTCAAGAGATTGACACTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGGCTTCATTTATCAAATCCATCATTTGCTCAAACAAATTCCTTAGTTTCTACAGTTATGTCTGCCAGCACAACAACTCTTCGTTATCCAGGGTACATGAATAATGACTTGGTTGGTCTTCTTGCCTCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGCTATACACCTTTGACTGTGGAACGCCAGGCTAATTTAATTCGTAAGACTACTGTACTTGATGTTATGAGAAGACTTCTGCAGGCAAAGAATATTATGGTCTCTTCTTATGCTCGGACAAAAGATGCTAGCCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGAAAACTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCAAGGAAGTCTCCTTATGTTCAAACTGCACATAGGGTCAGTGGCCTTATGCTGGCAAGTCATACTAGCATCCGTCACCTTTTCAGTAAAACATTGAGCCAGTATGAGAAGTTGAGAAAGAAACAAGCCTTTATAGACGCCTACAGGAAGTTTCCTATGTTTGCTGATAATGACCTCTCAGAATTTGATGAATCAAGGGACATAATTGAGACTTTGGTTGATGAATACAAGGCCTGTGAGTCCCCAGATTATATCAAATGGGGAATGGAGGATCCAAACAACATGCTAACAGGAGAAGGCAATGCTACAGGATCATTGGATCCAAATTCAGTAGCGTGA
Predicted protein sequences of Glyma.19g253300
>Glyma.19g253300.1.p sequence-type=predicted peptide transcript=Glyma.19g253300.1 locus=Glyma.19g253300 ID=Glyma.19g253300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSDYRNLYNHENIFVSDHGGGAGNNWASGYDQGQHVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPSFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANLIRKTTVLDVMRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKTLSQYEKLRKKQAFIDAYRKFPMFADNDLSEFDESRDIIETLVDEYKACESPDYIKWGMEDPNNMLTGEGNATGSLDPNSVA*

>Glyma.19g253300.2.p sequence-type=predicted peptide transcript=Glyma.19g253300.2 locus=Glyma.19g253300 ID=Glyma.19g253300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSDYRNLYNHENIFVSDHGGGAGNNWASGYDQGQHVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPSFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANLIRKTTVLDVMRRLLQAKNIMVSSYARTKDASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKTLSQYEKLRKKQAFIDAYRKFPMFADNDLSEFDESRDIIETLVDEYKACESPDYIKWGMEDPNNMLTGEGNATGSLDPNSVA*






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