SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07360.1 | AT | plant U-box 9 | JGI | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | JGI | N/A | IEA |
| GO:0000151 | GO-cc | ubiquitin ligase complex | JGI | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein ligase activity | JGI | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| PTHR23315 | Panther | BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING | JGI | N/A | IEA |
| PTHR23315:SF30 | Panther | JGI | N/A | IEA | |
| PF04564 | PFAM | U-box domain | JGI | N/A | IEA |
| PF05804 | PFAM | Kinesin-associated protein (KAP) | JGI | N/A | IEA |
|
Glyma.19g250700 not represented in the dataset |
Glyma.19g250700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g253100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g43980 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g250700.1 sequence-type=CDS polypeptide=Glyma.19g250700.1.p locus=Glyma.19g250700 ID=Glyma.19g250700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCAAGAGGGAGCAGCGATTGAGAGGAGTGTCGGCATCGGAATTGAAGGAGAAGTTGCGGGAATTGGTGAAGTCCATCGTGGACTCCGACGACTACACGCTTGAAGCCGCCGACGAAGCCATAGCCACCCTTTCTTCTCTGAAACATTTAAAGTCCCCCATCCCCGACGACTTTCCTCTTCCTCCCCAATTTCGCTGCCCCATTTCAACCCAATTGATGTCCGATCCCGTTATCCTATCCACCGGCCAGACTTACGACAGGCCATTTATTCAGAGGTGGTTGAATGAGGGTCACAGAACATGTCCTCAGACACAACAGGTTCTTTCTCACACAATTCTAACTCCCAATTACTTGGTCCGAGACATGATTCTCCTGTGGTGTCGGGACCGTGGAATTGACCTACCTAACCCTGCTAAGGACCTCGATGAAGTTGTCACCAATGCCGATAGAAACCATTTGAATTCGTTGCTTCGTAAGTTGCAATTGTCTGTTCCTGATCAGAAAGAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCCATTCGAACCCTTGTTGGGGAGTCCAGTGATACCATTCCCCTGTTGCTGAGTCCGTTAGCTGCGGCCTCAACTGACCCTGATCTCCATGAGGACTTGATCACCACGGTTCTCAATCTCTCAATTCATGATGACAATAAGAAGTCGTTTGCGGAGGATCCTGCGCTGATTTCTCTGCTTATTGATGCCTTGAAATGTGGCACTATTCAAACAAGGAGTAATGCTGCGGCTGCTATTTTCACGTTGTCGGCTATTGATTCCAACAAGCACATCATTGGAGAATCTGGAGCCATTAAACACTTGCTTGAGCTTTTGGATGAGGGACAACCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTGTGTCTTGTGCACGAGAATAAGGGGAGGACCGTTCGAGATGGGGCGGTTCGGGTTATTCTCAACAAGATGATGGACCACATACTAGTTGATGAGTTGTTGGCTATATTAGCACTTCTCTCCAGCCATCCCAAGGCTGTTGAAGAAATGGGTGATTTTGATGCCGTTCCTTTGTTATTGGGGGTTATTAGGGAGAGCACATCAGAGAGAAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAAGCCAATGGTACACTGACAAAGCTTGGAAAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAATGGTATTCTTGAGAGGCTTAATAGATCCCCCTCCTTAACTCACACTGCTTAG
>Glyma.19g250700.1.p sequence-type=predicted peptide transcript=Glyma.19g250700.1 locus=Glyma.19g250700 ID=Glyma.19g250700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAKREQRLRGVSASELKEKLRELVKSIVDSDDYTLEAADEAIATLSSLKHLKSPIPDDFPLPPQFRCPISTQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMILLWCRDRGIDLPNPAKDLDEVVTNADRNHLNSLLRKLQLSVPDQKEAAKELRLLTKRMPSIRTLVGESSDTIPLLLSPLAAASTDPDLHEDLITTVLNLSIHDDNKKSFAEDPALISLLIDALKCGTIQTRSNAAAAIFTLSAIDSNKHIIGESGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPKAVEEMGDFDAVPLLLGVIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLTKLGKCGTSRAKRKANGILERLNRSPSLTHTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
