SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56070.1 | AT | rotamase cyclophilin 2 | JGI | N/A | IEA |
| GO:0000413 | GO-bp | protein peptidyl-prolyl isomerization | EnsemblGenomes | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | EnsemblGenomes | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | JGI | N/A | IEA |
| GO:0003755 | GO-mf | peptidyl-prolyl cis-trans isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003755 | GO-mf | peptidyl-prolyl cis-trans isomerase activity | JGI | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| KOG0865 | KOG | Cyclophilin type peptidyl-prolyl cis-trans isomerase | JGI | N/A | IEA |
| PTHR11071 | Panther | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | JGI | N/A | IEA |
| PTHR11071:SF159 | Panther | JGI | N/A | IEA | |
| PF00160 | PFAM | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CYP11 | peptidyl-prolyl cis-trans isomerase CYP11 |
|
Glyma.19g249000 not represented in the dataset |
Glyma.19g249000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g251600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g43830 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g249000.2 sequence-type=transcript locus=Glyma.19g249000 ID=Glyma.19g249000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AACCCGCAATTATGCAAAACCCTAAATCCTCATCACGGCTAGGGCTACGGCATGTTGTATATTTATGGCATTGTTGCGCGCCCCTCCCATTGTTCGTAGGCAACTTCAACCTCACCAAAGGAACTAAGAATTTCATTGAGGCTAGAGAAAGTGGTGATCAATATGTCAAAGAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGACGAGTAGTGATGGAGTTGTTTGCCGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACGATCTGGGAAACCTTTACACTACAAAGGTTCTGTATTTCATCGTATTATTCCAGAATTTATGTGTCAGGGAGGAGATTTCACAAGAGGGAATGGGACCGGGGGTGAGTCAATCTACGGTTCCAAATTTGAAGATGAGAATTTCAATTTGAGGCATACCGGTCCTGGTATTCTCTCCATGGCAAATGCTGGAGCTCATACTAATGGTTCTCAGTTCTTCATATGTACTACAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGCAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTAGTAATAGAAGATTGTGGCCAGATTGTAGAGAAGTGAGTCTTGATACAACGATGTTTCGAGACATGTTTGTTGCTATTCAATGCAAATCACTAGTATTATAATAAGTGATTTGTGTAACTAGGAGTCAATTGTCCAGTATTAATGTAACTCTCAAATTTGTACTCCTAAATCTGCTTTTACATTTGTTCCAACTAAAAATGCGTAGCTGTCTGTAGTTGGTCAGAGATTACGTTGATAGAATTGTGGAAGCAATAGGCTCGAATATCTGTAGTTGATTGGTAAATTAGAATGAATAAGGATGAAGCACTACATATTTGCAATTAT
>Glyma.19g249000.1 sequence-type=CDS polypeptide=Glyma.19g249000.1.p locus=Glyma.19g249000 ID=Glyma.19g249000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCAAAGAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGACGAGTAGTGATGGAGTTGTTTGCCGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACGATCTGGGAAACCTTTACACTACAAAGGTTCTGTATTTCATCGTATTATTCCAGAATTTATGTGTCAGGGAGGAGATTTCACAAGAGGGAATGGGACCGGGGGTGAGTCAATCTACGGTTCCAAATTTGAAGATGAGAATTTCAATTTGAGGCATACCGGTCCTGGTATTCTCTCCATGGCAAATGCTGGAGCTCATACTAATGGTTCTCAGTTCTTCATATGTACTACAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGCAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTAGTAATAGAAGATTGTGGCCAGATTGTAGAGAAGTGA >Glyma.19g249000.2 sequence-type=CDS polypeptide=Glyma.19g249000.2.p locus=Glyma.19g249000 ID=Glyma.19g249000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCAAAGAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGACGAGTAGTGATGGAGTTGTTTGCCGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACGATCTGGGAAACCTTTACACTACAAAGGTTCTGTATTTCATCGTATTATTCCAGAATTTATGTGTCAGGGAGGAGATTTCACAAGAGGGAATGGGACCGGGGGTGAGTCAATCTACGGTTCCAAATTTGAAGATGAGAATTTCAATTTGAGGCATACCGGTCCTGGTATTCTCTCCATGGCAAATGCTGGAGCTCATACTAATGGTTCTCAGTTCTTCATATGTACTACAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGCAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTAGTAATAGAAGATTGTGGCCAGATTGTAGAGAAGTGA
>Glyma.19g249000.1.p sequence-type=predicted peptide transcript=Glyma.19g249000.1 locus=Glyma.19g249000 ID=Glyma.19g249000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSKNPKVFFDILIGKMKAGRVVMELFADATPKTAENFRALCTGEKGIGRSGKPLHYKGSVFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFEDENFNLRHTGPGILSMANAGAHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVQEMEKVGSGSGRTSEPVVIEDCGQIVEK* >Glyma.19g249000.2.p sequence-type=predicted peptide transcript=Glyma.19g249000.2 locus=Glyma.19g249000 ID=Glyma.19g249000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSKNPKVFFDILIGKMKAGRVVMELFADATPKTAENFRALCTGEKGIGRSGKPLHYKGSVFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFEDENFNLRHTGPGILSMANAGAHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVQEMEKVGSGSGRTSEPVVIEDCGQIVEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
