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Report for Sequence Feature Glyma.19g249000

Feature Type:gene_model
Chromosome:Gm19
Start:49513162
stop:49514810
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g249000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56070.1AT rotamase cyclophilin 2 JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI N/AIEA
PTHR11071Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR11071:SF159Panther JGI N/AIEA
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI N/AIEA

Proteins Associated with Glyma.19g249000
LocusGene SymbolProtein Name
CYP11 peptidyl-prolyl cis-trans isomerase CYP11

Expression Patterns of Glyma.19g249000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g249000
ParalogEvidenceComments
Glyma.03g251600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g249000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43830 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g249000
>Glyma.19g249000.2 sequence-type=transcript locus=Glyma.19g249000 ID=Glyma.19g249000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCCGCAATTATGCAAAACCCTAAATCCTCATCACGGCTAGGGCTACGGCATGTTGTATATTTATGGCATTGTTGCGCGCCCCTCCCATTGTTCGTAGGCAACTTCAACCTCACCAAAGGAACTAAGAATTTCATTGAGGCTAGAGAAAGTGGTGATCAATATGTCAAAGAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGACGAGTAGTGATGGAGTTGTTTGCCGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACGATCTGGGAAACCTTTACACTACAAAGGTTCTGTATTTCATCGTATTATTCCAGAATTTATGTGTCAGGGAGGAGATTTCACAAGAGGGAATGGGACCGGGGGTGAGTCAATCTACGGTTCCAAATTTGAAGATGAGAATTTCAATTTGAGGCATACCGGTCCTGGTATTCTCTCCATGGCAAATGCTGGAGCTCATACTAATGGTTCTCAGTTCTTCATATGTACTACAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGCAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTAGTAATAGAAGATTGTGGCCAGATTGTAGAGAAGTGAGTCTTGATACAACGATGTTTCGAGACATGTTTGTTGCTATTCAATGCAAATCACTAGTATTATAATAAGTGATTTGTGTAACTAGGAGTCAATTGTCCAGTATTAATGTAACTCTCAAATTTGTACTCCTAAATCTGCTTTTACATTTGTTCCAACTAAAAATGCGTAGCTGTCTGTAGTTGGTCAGAGATTACGTTGATAGAATTGTGGAAGCAATAGGCTCGAATATCTGTAGTTGATTGGTAAATTAGAATGAATAAGGATGAAGCACTACATATTTGCAATTAT
Coding sequences of Glyma.19g249000
>Glyma.19g249000.1 sequence-type=CDS polypeptide=Glyma.19g249000.1.p locus=Glyma.19g249000 ID=Glyma.19g249000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAGAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGACGAGTAGTGATGGAGTTGTTTGCCGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACGATCTGGGAAACCTTTACACTACAAAGGTTCTGTATTTCATCGTATTATTCCAGAATTTATGTGTCAGGGAGGAGATTTCACAAGAGGGAATGGGACCGGGGGTGAGTCAATCTACGGTTCCAAATTTGAAGATGAGAATTTCAATTTGAGGCATACCGGTCCTGGTATTCTCTCCATGGCAAATGCTGGAGCTCATACTAATGGTTCTCAGTTCTTCATATGTACTACAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGCAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTAGTAATAGAAGATTGTGGCCAGATTGTAGAGAAGTGA

>Glyma.19g249000.2 sequence-type=CDS polypeptide=Glyma.19g249000.2.p locus=Glyma.19g249000 ID=Glyma.19g249000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAGAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGACGAGTAGTGATGGAGTTGTTTGCCGATGCAACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACGATCTGGGAAACCTTTACACTACAAAGGTTCTGTATTTCATCGTATTATTCCAGAATTTATGTGTCAGGGAGGAGATTTCACAAGAGGGAATGGGACCGGGGGTGAGTCAATCTACGGTTCCAAATTTGAAGATGAGAATTTCAATTTGAGGCATACCGGTCCTGGTATTCTCTCCATGGCAAATGCTGGAGCTCATACTAATGGTTCTCAGTTCTTCATATGTACTACAAAGACACCATGGCTTGATGGGAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAGCGTTGTGCAGGAGATGGAGAAAGTGGGTTCAGGAAGTGGCAGGACATCTGAACCGGTAGTAATAGAAGATTGTGGCCAGATTGTAGAGAAGTGA
Predicted protein sequences of Glyma.19g249000
>Glyma.19g249000.1.p sequence-type=predicted peptide transcript=Glyma.19g249000.1 locus=Glyma.19g249000 ID=Glyma.19g249000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKNPKVFFDILIGKMKAGRVVMELFADATPKTAENFRALCTGEKGIGRSGKPLHYKGSVFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFEDENFNLRHTGPGILSMANAGAHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVQEMEKVGSGSGRTSEPVVIEDCGQIVEK*

>Glyma.19g249000.2.p sequence-type=predicted peptide transcript=Glyma.19g249000.2 locus=Glyma.19g249000 ID=Glyma.19g249000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKNPKVFFDILIGKMKAGRVVMELFADATPKTAENFRALCTGEKGIGRSGKPLHYKGSVFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFEDENFNLRHTGPGILSMANAGAHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVQEMEKVGSGSGRTSEPVVIEDCGQIVEK*






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