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Report for Sequence Feature Glyma.19g248900

Feature Type:gene_model
Chromosome:Gm19
Start:49504656
stop:49506075
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g248900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23240.1AT ethylene response factor 1 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
PF00847PFAM AP2 domain JGI N/AIEA

Expression Patterns of Glyma.19g248900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g248900 not represented in the dataset
Glyma.19g248900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g248900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43815 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g248900
>Glyma.19g248900.2 sequence-type=transcript locus=Glyma.19g248900 ID=Glyma.19g248900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAAAACCACGCCAGACCTCTAAACTTTGCATACACTCAAATTAGGAGTTGAGAATGAGTTCCTCAAACTTTGAATCCCCTTACGAGTACTCTTGTTCTTCTTCATCCTCACGTCATAATCAGTATTCCCTTCCTTTCAACCACAATGACTCGCAAGAAATGCTCCTTTACCAAGTGCTGACACAGGCTGGTGCAACTTCCTCGGTGTCTCATGGTTCAGGTAGTGTTGTGGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGAAGGAGGCCCTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCTACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCGTTGGCTTACGACCAGGCCGCGCTGGTCATGAGAGGGTCCATGGCAGTGTTGAACTTCCCAGCTGAGATTGTTCGCCAATCGCTTCGGAACATGGAGCAGTACGGTAGTTTCCAAGAAGGCTCTTCTCCAGTTCTGGAGTTGAAGAAGAGGCACTCCATGAAGAGAAAATCAGAGACCAAGAAGCACCAACTCCACGATGTGATGGTGTTGGAGGACTTAGGGGCAGAGTATTTGGAACACCTTCTTACTCTCTCCCAGGATATGGATATGGATGCTTGTTAGCAGTGGGATCAGGTCTGTTCAAGAATGTCCTCTTTTACGTGGAATTTGTGGACCATTTTCAGTGCAATGAGACAAAAGATTGTCGCCGAAGGCAATTTATTGATCGATCTTGAAGTCTATCTACAATTGTATATCCAACCAAGAAATTTTTAGCATATCTGTGGTGTATTTTTGACTGATTCGTGTATGTATTTTTGGGAATCTACAACATGTTTTACGTC
Coding sequences of Glyma.19g248900
>Glyma.19g248900.1 sequence-type=CDS polypeptide=Glyma.19g248900.1.p locus=Glyma.19g248900 ID=Glyma.19g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCCTCAAACTTTGAATCCCCTTACGAGTACTCTTGTTCTTCTTCATCCTCACGTCATAATCAGTATTCCCTTCCTTTCAACCACAATGACTCGCAAGAAATGCTCCTTTACCAAGTGCTGACACAGGCTGGTGCAACTTCCTCGGTGTCTCATGGTTCAGGTAGTGTTGTGGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGAAGGAGGCCCTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCTACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCGTTGGCTTACGACCAGGCCGCGCTGGTCATGAGAGGGTCCATGGCAGTGTTGAACTTCCCAGCTGAGATTGTTCGCCAATCGCTTCGGAACATGGAGCAGTACGGTAGTTTCCAAGAAGGCTCTTCTCCAGTTCTGGAGTTGAAGAAGAGGCACTCCATGAAGAGAAAATCAGAGACCAAGAAGCACCAACTCCACGATGTGATGGTGTTGGAGGACTTAGGGGCAGAGTATTTGGAACACCTTCTTACTCTCTCCCAGGATATGGATATGGATGCTTGTTAG

>Glyma.19g248900.2 sequence-type=CDS polypeptide=Glyma.19g248900.2.p locus=Glyma.19g248900 ID=Glyma.19g248900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCCTCAAACTTTGAATCCCCTTACGAGTACTCTTGTTCTTCTTCATCCTCACGTCATAATCAGTATTCCCTTCCTTTCAACCACAATGACTCGCAAGAAATGCTCCTTTACCAAGTGCTGACACAGGCTGGTGCAACTTCCTCGGTGTCTCATGGTTCAGGTAGTGTTGTGGAAGCAGAGGTTTCGGTTTCGTACAGAGGGGTTCGAAGGAGGCCCTGGGGGAAGTTTGCGGCGGAGATAAGGGACTCTACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCGTTGGCTTACGACCAGGCCGCGCTGGTCATGAGAGGGTCCATGGCAGTGTTGAACTTCCCAGCTGAGATTGTTCGCCAATCGCTTCGGAACATGGAGCAGTACGGTAGTTTCCAAGAAGGCTCTTCTCCAGTTCTGGAGTTGAAGAAGAGGCACTCCATGAAGAGAAAATCAGAGACCAAGAAGCACCAACTCCACGATGTGATGGTGTTGGAGGACTTAGGGGCAGAGTATTTGGAACACCTTCTTACTCTCTCCCAGGATATGGATATGGATGCTTGTTAG
Predicted protein sequences of Glyma.19g248900
>Glyma.19g248900.1.p sequence-type=predicted peptide transcript=Glyma.19g248900.1 locus=Glyma.19g248900 ID=Glyma.19g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSNFESPYEYSCSSSSSRHNQYSLPFNHNDSQEMLLYQVLTQAGATSSVSHGSGSVVEAEVSVSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALVMRGSMAVLNFPAEIVRQSLRNMEQYGSFQEGSSPVLELKKRHSMKRKSETKKHQLHDVMVLEDLGAEYLEHLLTLSQDMDMDAC*

>Glyma.19g248900.2.p sequence-type=predicted peptide transcript=Glyma.19g248900.2 locus=Glyma.19g248900 ID=Glyma.19g248900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSNFESPYEYSCSSSSSRHNQYSLPFNHNDSQEMLLYQVLTQAGATSSVSHGSGSVVEAEVSVSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALVMRGSMAVLNFPAEIVRQSLRNMEQYGSFQEGSSPVLELKKRHSMKRKSETKKHQLHDVMVLEDLGAEYLEHLLTLSQDMDMDAC*






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