SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g247700

Feature Type:gene_model
Chromosome:Gm19
Start:49381856
stop:49386443
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g247700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04460.1AT peroxin-12 JGI N/AIEA
GO:0006513GO-bp protein monoubiquitination EnsemblGenomesN/AIEA
GO:0006625GO-bp protein targeting to peroxisome EnsemblGenomesN/AIEA
GO:0016558GO-bp protein import into peroxisome matrix EnsemblGenomesN/AIEA
GO:0005777GO-cc peroxisome EnsemblGenomesN/AIEA
GO:0005778GO-cc peroxisomal membrane EnsemblGenomesN/AIEA
GO:0005779GO-cc integral component of peroxisomal membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:1990429GO-cc peroxisomal importomer complex EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0008022GO-mf protein C-terminus binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
KOG0826 KOG Predicted E3 ubiquitin ligase involved in peroxisome organization JGI N/AIEA
PTHR12888Panther PEROXISOME ASSEMBLY PROTEIN 12 (PEROXIN-12) JGI N/AIEA
PF04757PFAM Pex2 / Pex12 amino terminal region JGI N/AIEA

Expression Patterns of Glyma.19g247700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g247700
ParalogEvidenceComments
Glyma.03g250100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g247700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43700 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g247700
>Glyma.19g247700.2 sequence-type=transcript locus=Glyma.19g247700 ID=Glyma.19g247700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAAACATATCATAGATAAATGGAAGCGAGCTAAGCATGGCGGTGGTTGGTGGTGGTGCCTGCCGGAATTGAATTGAAACAGTGAAGAAAGAGAGATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATAtcctcctccccctcctccgcctccaccAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAGGCCTGTTGGAGCTGGGGTTGGTAGAATTACAGTTATCTTGAGTACATAAGCAAAAGATTCCCAATTATTGTTGTACTACTAATGTATAGTATATCTTTCTCTTTTAGTAAGTGGCTTAATAAGAGGCATCATTTTTGTTATTTTCCCCTTATTCATTCGTCGCTCAGTAGCACTGCTGGTGGCTGGGTACTCTGCTTCGGCAAATGAACTATTGCCAATACAAGAAACATACAAATTGAGACCCTAATTATTACTCGATATTTGCACAAAACAATTGTGAAAGAAAGAACTTCAACTTAGAATAATCTATGCATAAAATAATTGAAGAACTGAATGATATAGTAAAGAAATGCATTTGTCACGAATATTCTTCCAGGGCTACAACAAAAATCACGATTCTTTATCACTCAGAAGAAAAAAACTGCCTGTAGGACCCTAGCTCAAACTTCTGCAGCACTGGCTTCAAACGCTCTTTCTAGTCTGGTCTGCAATGCAGTTGAACTCCTCTTTGGTTTCACATCCTGCAATACAAGCAGTTCTGATTTT
Coding sequences of Glyma.19g247700
>Glyma.19g247700.1 sequence-type=CDS polypeptide=Glyma.19g247700.1.p locus=Glyma.19g247700 ID=Glyma.19g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGACATTGCAAGGAGCATTGCTCAGCTGTACGTACACTGTACTTGACTATGCACAAACCGGTTTGATTGCAGCAGTGTTCTTCTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG

>Glyma.19g247700.2 sequence-type=CDS polypeptide=Glyma.19g247700.2.p locus=Glyma.19g247700 ID=Glyma.19g247700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG
Predicted protein sequences of Glyma.19g247700
>Glyma.19g247700.1.p sequence-type=predicted peptide transcript=Glyma.19g247700.1 locus=Glyma.19g247700 ID=Glyma.19g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTSNTALRRRQRVLSVLFLVVLPYLKSKLHSIYNREREARLQATLWGDETEHDYSPVSVPTSDAGAPVTTRVAKRVQRILGFCYPWLHASAEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV*

>Glyma.19g247700.2.p sequence-type=predicted peptide transcript=Glyma.19g247700.2 locus=Glyma.19g247700 ID=Glyma.19g247700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTSNTALRRRQRVLSVLFLVVLPYLKSKLHSIYNREREARLQATLWGDETEHDYSPVSVPTSDAGAPVTTRVAKRVQRILGFCYPWLHASAEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo