SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04460.1 | AT | peroxin-12 | JGI | N/A | IEA |
| GO:0006513 | GO-bp | protein monoubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0006625 | GO-bp | protein targeting to peroxisome | EnsemblGenomes | N/A | IEA |
| GO:0016558 | GO-bp | protein import into peroxisome matrix | EnsemblGenomes | N/A | IEA |
| GO:0005777 | GO-cc | peroxisome | EnsemblGenomes | N/A | IEA |
| GO:0005778 | GO-cc | peroxisomal membrane | EnsemblGenomes | N/A | IEA |
| GO:0005779 | GO-cc | integral component of peroxisomal membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:1990429 | GO-cc | peroxisomal importomer complex | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008022 | GO-mf | protein C-terminus binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| KOG0826 | KOG | Predicted E3 ubiquitin ligase involved in peroxisome organization | JGI | N/A | IEA |
| PTHR12888 | Panther | PEROXISOME ASSEMBLY PROTEIN 12 (PEROXIN-12) | JGI | N/A | IEA |
| PF04757 | PFAM | Pex2 / Pex12 amino terminal region | JGI | N/A | IEA |
|
Glyma.19g247700 not represented in the dataset |
Glyma.19g247700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g250100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g43700 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g247700.2 sequence-type=transcript locus=Glyma.19g247700 ID=Glyma.19g247700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TAAACATATCATAGATAAATGGAAGCGAGCTAAGCATGGCGGTGGTTGGTGGTGGTGCCTGCCGGAATTGAATTGAAACAGTGAAGAAAGAGAGATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATAtcctcctccccctcctccgcctccaccAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAGGCCTGTTGGAGCTGGGGTTGGTAGAATTACAGTTATCTTGAGTACATAAGCAAAAGATTCCCAATTATTGTTGTACTACTAATGTATAGTATATCTTTCTCTTTTAGTAAGTGGCTTAATAAGAGGCATCATTTTTGTTATTTTCCCCTTATTCATTCGTCGCTCAGTAGCACTGCTGGTGGCTGGGTACTCTGCTTCGGCAAATGAACTATTGCCAATACAAGAAACATACAAATTGAGACCCTAATTATTACTCGATATTTGCACAAAACAATTGTGAAAGAAAGAACTTCAACTTAGAATAATCTATGCATAAAATAATTGAAGAACTGAATGATATAGTAAAGAAATGCATTTGTCACGAATATTCTTCCAGGGCTACAACAAAAATCACGATTCTTTATCACTCAGAAGAAAAAAACTGCCTGTAGGACCCTAGCTCAAACTTCTGCAGCACTGGCTTCAAACGCTCTTTCTAGTCTGGTCTGCAATGCAGTTGAACTCCTCTTTGGTTTCACATCCTGCAATACAAGCAGTTCTGATTTT
>Glyma.19g247700.1 sequence-type=CDS polypeptide=Glyma.19g247700.1.p locus=Glyma.19g247700 ID=Glyma.19g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGACATTGCAAGGAGCATTGCTCAGCTGTACGTACACTGTACTTGACTATGCACAAACCGGTTTGATTGCAGCAGTGTTCTTCTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG >Glyma.19g247700.2 sequence-type=CDS polypeptide=Glyma.19g247700.2.p locus=Glyma.19g247700 ID=Glyma.19g247700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTTCCGGCGAGCCTCCGCGCCGCTCTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAGCTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCCGAATCTCTCTACGGCCTCCGAAGAAGACCAGCCAATATCGCCCTCAAGAATGACGACGCCACTACCAGCAACACCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTCTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGCTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCGAACACGATTATTCTCCAGTGTCAGTGCCAACCTCTGATGCCGGTGCCCCCGTTACAACGCGTGTCGCGAAGAGAGTTCAGAGAATTTTAGGGTTTTGCTACCCGTGGTTACATGCTAGTGCTGAGGGCTTGCAATTTGCTTACCAGCTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGCCAGGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATGCGTAACCGTGAACGTGAGAGACTTCGTGGGCCTCAATGGTTGAAGATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGGTAGCCAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGCAAATCCATCTGTAGTTACTGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACGTTAATGCCTTCAACAGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG
>Glyma.19g247700.1.p sequence-type=predicted peptide transcript=Glyma.19g247700.1 locus=Glyma.19g247700 ID=Glyma.19g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTSNTALRRRQRVLSVLFLVVLPYLKSKLHSIYNREREARLQATLWGDETEHDYSPVSVPTSDAGAPVTTRVAKRVQRILGFCYPWLHASAEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV* >Glyma.19g247700.2.p sequence-type=predicted peptide transcript=Glyma.19g247700.2 locus=Glyma.19g247700 ID=Glyma.19g247700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTSNTALRRRQRVLSVLFLVVLPYLKSKLHSIYNREREARLQATLWGDETEHDYSPVSVPTSDAGAPVTTRVAKRVQRILGFCYPWLHASAEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
