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Report for Sequence Feature Glyma.19g245400

Feature Type:gene_model
Chromosome:Gm19
Start:49238744
stop:49239912
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g245400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04720.1AT pathogenesis-related 4 JGI N/AIEA
GO:0042742GO-bp defense response to bacterium EnsemblGenomesN/AIEA
GO:0042742GO-bp defense response to bacterium JGI N/AIEA
GO:0050832GO-bp defense response to fungus EnsemblGenomesN/AIEA
GO:0050832GO-bp defense response to fungus JGI N/AIEA
GO:0008061GO-mf chitin binding EnsemblGenomesN/AIEA
GO:0008061GO-mf chitin binding JGI N/AIEA
PTHR22595Panther CHITINASE-RELATED JGI N/AIEA
PTHR22595:SF1Panther HEVEIN-LIKE PREPROPROTEIN JGI N/AIEA
PF00187PFAM Chitin recognition protein JGI N/AIEA
PF00967PFAM Barwin family JGI N/AIEA

Proteins Associated with Glyma.19g245400
LocusGene SymbolProtein Name
WIN wound-induced protein

Expression Patterns of Glyma.19g245400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g245400
ParalogEvidenceComments
Glyma.03g247500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g245400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g245400
>Glyma.19g245400.1 sequence-type=CDS polypeptide=Glyma.19g245400.1.p locus=Glyma.19g245400 ID=Glyma.19g245400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAAAGCTTGGGTAGGCCTGGTGGTATTGCTGTGTTTGATTGTCACGGCCATCGCCGAACAATGCGGTCGTCAAGCTGGCGGGCAGACATGTCCCAACAACCTATGCTGCAGCCAGTACGGTTGGTGTGGAAACACCGAAGAATACTGTTCCCCTTCTAAGAACTGCCAGAGCAACTGCTGGGGAGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCGGTGAAAGTGCTTCTAATGTCCGCGCCACATATCATTACTATGAGCCAGAGCAACACGGGTGGGACTTGAACGCCGTGAGTGCTTATTGCTCAACTTGGGACGCTAGCAAACCTTACTCATGGCGCAGTAAATATGGCTGGACCGCTTTCTGTGGTCCCGTTGGTCCTCGTGGCCGTGATTCTTGTGGAAAGTGCTTGCGGGTGACAAATACAGGAACAGGAGCAAACACAATTGTGAGAATCGTAGATCAGTGCAGCAACGGAGGGTTGGATTTGGACGTGGGAGTGTTCAATCGGATAGACACAGATGGAAGAGGATATCAACAGGGGCATCTCATTGTTAACTATCAGTTTGTGGATTGTGGGAATGAGCTCGACCTCACCAAACCTTTACTCTCCATCCTCGATGCTCCCTAA
Predicted protein sequences of Glyma.19g245400
>Glyma.19g245400.1.p sequence-type=predicted peptide transcript=Glyma.19g245400.1 locus=Glyma.19g245400 ID=Glyma.19g245400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKAWVGLVVLLCLIVTAIAEQCGRQAGGQTCPNNLCCSQYGWCGNTEEYCSPSKNCQSNCWGGGGGGGGGGGGESASNVRATYHYYEPEQHGWDLNAVSAYCSTWDASKPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGNELDLTKPLLSILDAP*






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