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Report for Sequence Feature Glyma.19g245200

Feature Type:gene_model
Chromosome:Gm19
Start:49232306
stop:49234964
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g245200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04730.1AT indoleacetic acid-induced protein 16 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PF02309PFAM AUX/IAA family JGI N/AIEA

Proteins Associated with Glyma.19g245200
LocusGene SymbolProtein Name
IAA59 Indole-3-Acetic Acid Responsive Gene 59

Expression Patterns of Glyma.19g245200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g245200
ParalogEvidenceComments
Glyma.03g247400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g245200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43450 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g245200
>Glyma.19g245200.1 sequence-type=CDS polypeptide=Glyma.19g245200.1.p locus=Glyma.19g245200 ID=Glyma.19g245200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGCAGAGCCAGACAAGTACAAGATGATCAACTTTGAAGAAACCGAGTTGCGACTCGGCCTGCCACTCAGTGGAAACGAGACGACGCTCAAAAACACTTGCAGTACTGGGAAGAGGGTTTTTTCGGATACTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAATAACGCCCCTCCTCCTGCAAAGCCACCCGCAAAGGCACAAGTGGTGGGGTGGCCACCAGTGAGGTCATTCAGAAAGAACATTGTAAACAACGTTCAAAGGAGTAACAACAACGATGGCGAAAAAGCCGCCACAAGTAGTAGCAACAATGTGAACATGGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCTCCCTATTTACGCAAGGTGGATTTGAAGATGTACAAGAGCCACCAAGAGCTGTTGGATGCACTGGCTAAAATGTTCAGTTCATTCACCATCGACAAGTGTAGTTCCCAAGGCATGAAAGACTTCATGAACGAGGGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTGTGAAGACAAAGATGGTGATTGGATGCTCGTGGGTGACGTACCTTGGGAAATACTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGCGGCAATCGGGCTAGCACCAAGAGCAGTGCAAAAGTGCAAGAACAGAAGCTAG
Predicted protein sequences of Glyma.19g245200
>Glyma.19g245200.1.p sequence-type=predicted peptide transcript=Glyma.19g245200.1 locus=Glyma.19g245200 ID=Glyma.19g245200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAEPDKYKMINFEETELRLGLPLSGNETTLKNTCSTGKRVFSDTSVDLKLNLSSTSNNAPPPAKPPAKAQVVGWPPVRSFRKNIVNNVQRSNNNDGEKAATSSSNNVNMGAAFVKVSMDGAPYLRKVDLKMYKSHQELLDALAKMFSSFTIDKCSSQGMKDFMNEGKLIDLLNGSDYVPTCEDKDGDWMLVGDVPWEILVESCKRLRIMKGSAAIGLAPRAVQKCKNRS*






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