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Report for Sequence Feature Glyma.19g244600

Feature Type:gene_model
Chromosome:Gm19
Start:49179855
stop:49193426
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g244600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G28840.1AT GDP-D-mannose 3',5'-epimerase JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0047918GO-mf GDP-mannose 3,5-epimerase activity EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
KOG1429 KOG dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF35Panther UDP-GLUCURONIC ACID DECARBOXYLASE 1 JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-5115SoyCyc9 GDP-L-galactose biosynthesis Plant Metabolic Network ISS
PWY-882SoyCyc9 L-ascorbate biosynthesis I (L-galactose pathway) Plant Metabolic Network ISS
PWY4FS-11SoyCyc9 L-ascorbate biosynthesis II (L-gulose pathway) Plant Metabolic Network ISS
PWY4FS-12SoyCyc9 VTC2 cycle Plant Metabolic Network ISS
PWY4FS-13SoyCyc9 extended VTC2 cycle Plant Metabolic Network ISS
GN7V-53540SoyCyc9-rxn GDP-mannose 3,5-epimerase Plant Metabolic Network ISS

Proteins Associated with Glyma.19g244600
LocusGene SymbolProtein Name
GME1 GDP-mannose 3',5'-epimerase

Expression Patterns of Glyma.19g244600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g244600
ParalogEvidenceComments
Glyma.03g247000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g244600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g244600
>Glyma.19g244600.2 sequence-type=transcript locus=Glyma.19g244600 ID=Glyma.19g244600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCATTCTTCTTCTCCTAAATCCTAATCCTTTTTCACTTTCAGTTCTCAGCATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACTGGGGCTGGTGGTTTCATTGCCTCACACATTGCTCGCCGCCTCAAGACCGAGGGACATTACATCATTGCTTCTGATTGGAAGAAGAATGAGCACATGACTGAGGACATGTTCTGCCATGAATTCCATCTTGTTGACCTTAGGGTCATGGATAACTGCTTGACAGTTACCAAGGGTGTGGACCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGTATGAATGAGATGGCAGAGATTGTTCTTAGCTTTGAGGATAAGAATATACCAATATACCATATTCCTGGCCCAGAAGGTGTTCGGGGCCGTAATTCAGACAATACATTAATCAAAGAGAAACTTGGCTGGGCTCCAACTATGAAGTTGAAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAGCAGCTTGAGAAAGAGAAGGCAGAAGGTGTTGATTTATCAGGCTATGGATCATCCAAAGTGGTTCAGACTCAAGCCCCAGTTCAACTTGGCTCGCTACGTGCTGCAGATGGCAAAGAATAAAGCTGCTAGTGCAAGGGATGTTCGGCAGTTGCAGCAGATGGCAAAGAATAAGAGTGAACAATGCATTTCCAAGTGAAGGGCAGGCTTTTATGTTGCTATTTTGTAGAGATCTATGGTTACAGATTAGCTATTGAAGTTAGTTTTGGAACTTGTTCATGTATTTGTAACGGATGGTGTTATGTTCTTGTTTTGTTTGAGGTAATAATAATAACTGCTGCTTAAGGTGATGTTACTGCTTGGCAAATTTTAAATTGTGTTTAAAGTCTATATAAATTGATTAATAATCATAAGAAAAATTTCTTCTGCATGAATTTCAGGTTTTGTTGAACAAAATTTAGATGTCAAATCTTAGTTGCATTTACTGTATTCTCTTAAAAAAAATGAACTT
Coding sequences of Glyma.19g244600
>Glyma.19g244600.1 sequence-type=CDS polypeptide=Glyma.19g244600.1.p locus=Glyma.19g244600 ID=Glyma.19g244600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACTGGGGCTGGTGGTTTCATTGCCTCACACATTGCTCGCCGCCTCAAGACCGAGGGACATTACATCATTGCTTCTGATTGGAAGAAGAATGAGCACATGACTGAGGACATGTTCTGCCATGAATTCCATCTTGTTGACCTTAGGGTCATGGATAACTGCTTGACAGTTACCAAGGGTGTGGACCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGTATGAATGAGATGGCAGAGATTGTTCTTAGCTTTGAGGATAAGAATATACCAATATACCATATTCCTGGCCCAGAAGGTGTTCGGGGCCGTAATTCAGACAATACATTAATCAAAGAGAAACTTGGCTGGGCTCCAACTATGAAGTTGAAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAGCAGCTTGAGAAAGAGAAGGCAGAAGGTGTTGATTTATCAGGCTATGGATCATCCAAAGTGGTTCAGACTCAAGCCCCAGTTCAACTTGGCTCGCTACGTGCTGCAGATGGCAAAGAATAA

>Glyma.19g244600.2 sequence-type=CDS polypeptide=Glyma.19g244600.2.p locus=Glyma.19g244600 ID=Glyma.19g244600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGTTCTGGAACAACCGACTATGGAGCATACACATACCAAAACCTTGAGAGGGAACCTTACTGGCCCTCTGAAAAGCTCAGAATTTCCATCACTGGGGCTGGTGGTTTCATTGCCTCACACATTGCTCGCCGCCTCAAGACCGAGGGACATTACATCATTGCTTCTGATTGGAAGAAGAATGAGCACATGACTGAGGACATGTTCTGCCATGAATTCCATCTTGTTGACCTTAGGGTCATGGATAACTGCTTGACAGTTACCAAGGGTGTGGACCATGTTTTCAATCTTGCTGCTGATATGGGTGGGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATAACATATATGGTCCTTATGGGACATGGAAGGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTCAGTATGAATGAGATGGCAGAGATTGTTCTTAGCTTTGAGGATAAGAATATACCAATATACCATATTCCTGGCCCAGAAGGTGTTCGGGGCCGTAATTCAGACAATACATTAATCAAAGAGAAACTTGGCTGGGCTCCAACTATGAAGTTGAAGGATGGGCTGAGAATTACATACTTTTGGATCAAAGAGCAGCTTGAGAAAGAGAAGGCAGAAGGTGTTGATTTATCAGGCTATGGATCATCCAAAGTGGTTCAGACTCAAGCCCCAGTTCAACTTGGCTCGCTACGTGCTGCAGATGGCAAAGAATAA
Predicted protein sequences of Glyma.19g244600
>Glyma.19g244600.1.p sequence-type=predicted peptide transcript=Glyma.19g244600.1 locus=Glyma.19g244600 ID=Glyma.19g244600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSSGTTDYGAYTYQNLEREPYWPSEKLRISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLTVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPYGTWKGGREKAPAAFCRKTLTSKDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKNIPIYHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAEGVDLSGYGSSKVVQTQAPVQLGSLRAADGKE*

>Glyma.19g244600.2.p sequence-type=predicted peptide transcript=Glyma.19g244600.2 locus=Glyma.19g244600 ID=Glyma.19g244600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSSGTTDYGAYTYQNLEREPYWPSEKLRISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLTVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPYGTWKGGREKAPAAFCRKTLTSKDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKNIPIYHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLEKEKAEGVDLSGYGSSKVVQTQAPVQLGSLRAADGKE*






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