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Report for Sequence Feature Glyma.19g243800

Feature Type:gene_model
Chromosome:Gm19
Start:49122357
stop:49124073
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g243800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04790.1AT Ribose 5-phosphate isomerase, type A protein JGI N/AIEA
GO:0009052GO-bp pentose-phosphate shunt, non-oxidative branch EnsemblGenomesN/AIEA
GO:0009052GO-bp pentose-phosphate shunt, non-oxidative branch JGI N/AIEA
GO:0004751GO-mf ribose-5-phosphate isomerase activity EnsemblGenomesN/AIEA
GO:0004751GO-mf ribose-5-phosphate isomerase activity JGI N/AIEA
KOG3075 KOG Ribose 5-phosphate isomerase JGI N/AIEA
PTHR11934Panther RIBOSE-5-PHOSPHATE ISOMERASE JGI N/AIEA
PF06026PFAM Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JGI N/AIEA
CALVIN-PWYSoyCyc9 Calvin-Benson-Bassham cycle Plant Metabolic Network ISS
NONOXIPENT-PWYSoyCyc9 pentose phosphate pathway (non-oxidative branch) Plant Metabolic Network ISS
PENTOSE-P-PWYSoyCyc9 pentose phosphate pathway Plant Metabolic Network ISS
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-5723SoyCyc9 Rubisco shunt Plant Metabolic Network ISS
GN7V-57111SoyCyc9-rxn ribose-5-phosphate isomerase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g243800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g243800 not represented in the dataset
Glyma.19g243800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g243800
ParalogEvidenceComments
Glyma.03g246300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g243800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g243800
>Glyma.19g243800.1 sequence-type=CDS polypeptide=Glyma.19g243800.1.p locus=Glyma.19g243800 ID=Glyma.19g243800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCCTATCCCTCTCCTCTCCCCCATCTCTCTCATCCGCACACCACAACGCCTCCACCCGCCTTATCCTGCGCACCCCTAACTCCCTTAACCTGCGCACCATACCCCATTCTCTCCCTATCCGCGCCATCACCCTCACCCAGGACGACCTCAAGAGACTCGCTGCCGACAAGGCCGTGGAGTCCGTCAAGAGCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCGCCAAGCTCGGCGCACTCCTCGCCTCCGGCCAACTCACTGACATCGTCGGGGTCCCTACCTCCAAGCGCACGGAGGAGCAGGCCCGCTCTCTCGGCATCCCCCTCTCCGTCCTCGACCACAATCCCCGCCTCGATCTCGCCATCGACGGCGCCGACGAGGTCGACCCCGACCTCAACCTCGTCAAAGGCCGCGGCGGCGCCCTCCTCCGCGAGAAGATGGTCGAGGCCGCCTCCGACAAGTTCGTCGTGGTCGTCGACGACACAAAGCTGGTGGACGGCCTCGGCGGAAGCGGCCTGGCCATGCCGGTGGAGGTGGTCCAGTTCTGCTGGAAGTACAATCTGGATCGGCTTCAGGAGCTTTTCAAGGAAGAAGGCGTGGAAGCGAAATTAAGACTGGAGGAGAGTGGGAAACCCTACGTCAGCGATAATTCCAATTACATCGTCGATTTGTACTTCAAGACTCCTATCAGGGATGCATTGGCCGCTGGCGCCGAAATTTCCGCTCTCGAAGGCGTCGTCGACCACGGCTTGTTCTTGAACATGGCCACCTCTGTCATCATCGCTGCTAAATCCGGCGTTCAAGTCAGACTCAGACGCTAA
Predicted protein sequences of Glyma.19g243800
>Glyma.19g243800.1.p sequence-type=predicted peptide transcript=Glyma.19g243800.1 locus=Glyma.19g243800 ID=Glyma.19g243800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLSLSSPPSLSSAHHNASTRLILRTPNSLNLRTIPHSLPIRAITLTQDDLKRLAADKAVESVKSGMVLGLGTGSTAAFVVAKLGALLASGQLTDIVGVPTSKRTEEQARSLGIPLSVLDHNPRLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVDGLGGSGLAMPVEVVQFCWKYNLDRLQELFKEEGVEAKLRLEESGKPYVSDNSNYIVDLYFKTPIRDALAAGAEISALEGVVDHGLFLNMATSVIIAAKSGVQVRLRR*






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