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Report for Sequence Feature Glyma.19g242400

Feature Type:gene_model
Chromosome:Gm19
Start:49015892
stop:49028409
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g242400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54490.1AT exoribonuclease 4 JGI N/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090503GO-bp RNA phosphodiester bond hydrolysis, exonucleolytic EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004518GO-mf nuclease activity EnsemblGenomesN/AIEA
GO:0004527GO-mf exonuclease activity EnsemblGenomesN/AIEA
GO:0004527GO-mf exonuclease activity JGI N/AIEA
GO:0004534GO-mf 5'-3' exoribonuclease activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG2044 KOG 5'-3' exonuclease HKE1/RAT1 JGI N/AIEA
PTHR12341Panther 5'->3' EXORIBONUCLEASE JGI N/AIEA
PF00098PFAM Zinc knuckle JGI N/AIEA
PF03159PFAM XRN 5'-3' exonuclease N-terminus JGI N/AIEA

Expression Patterns of Glyma.19g242400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g242400 not represented in the dataset
Glyma.19g242400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g242400
ParalogEvidenceComments
Glyma.03g245000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g242400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g43160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g242400
>Glyma.19g242400.1 sequence-type=CDS polypeptide=Glyma.19g242400.1.p locus=Glyma.19g242400 ID=Glyma.19g242400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGTGCCAGCGTTTTACCGGTGGCTCGCGGATCGGTACCCGCTCTCGATCACCGACGTCGTGGAGGAGGATCCCTCTGCCGGCGCCGTTGATGTGTCTAAACCTAATCCCAGTGGCATGGAGTTCGACAACTTGTACTTGGACATGAACGGCATCATTCACCCCTGTTTTCACCCTGATGGCAAGCCAGCACCCGCTACCTACGAAGATGTATTCAAATCAATCTTTGACTACATTGACCATATATTTTCATTGGTTCGCCCAAGGAAGCTTCTTTATCTTGCAATCGATGGTGTTGCACCAAGAGCCAAAATGAATCAACAACGTTCACGGCGTTTCCGAGCCGCAAAAGATGCAGCTGAGAAAGACGCAGCTGAGGCTGAAGCTGAAATTGAAAGACTTAGGGAAGAATTTGAGGGTGAGATGAAACTCTTGTCTTCTAAAGACAAGCCAGAGACTTATGATTCAAATGTCATTACCCCTGGCACTCCATTTATGGGAGTGCTGTCAGTGGCTCTTCAGTATTATATACAGACTAGATTGAACTACAACCCTGGCTGGTGGAATACAAAGGTTATACTTTCTGATTCAAATGTTCCTGGTGAGGGAGAACATAAAATAATGGATTACATACGATTACAGCGTAACCTTCCTGGGTTTAATCCAAATACTCGTCACTGTTTGTATGGATTGGATGCTGATTTAATTATGTTGTCCTTAGCCACACATGAGGTTCATTTCTCAATATTGAGGGAGGTAATCACTTTCCCTGGACAACAGGAGAAGTGTTTTCAGTGTGGCCAACTTGGCCATTTTGCAGCTGAATGTCGTGGTAAGCCAGGTGAGAAAGCTGAGGACTGGAATCCAGTTGATGATACCCCAATTCACAAGAAGAAATATCAGTTTCTTAACATCTGGGTGCTGCGTGAATATTTGCAATATGAAATGGAGATTCCCAACCCTCCTTTTGAGATTGACTTTGAACGCATAGTGGATGATTTTGTATTTCTATGCTTCTTTGTTGGCAATGACTTTCTTCCACATATGCCAACATTAGAGATCCGTGAGGGGGCTTTAAATTTATTGATGCATATTTACAGAAAAGAATTCACCGCCATGGGTGGTTATCTTACTGAAGCGGGTGAGGTTTTCTTAGAGAGAGTAGAACATTTTATTCAGTCTGTTGCTGTTCATGAAGATCAAATATTTCAGAAACGAGTTCGGATTCAACAGGCTACAGAAATTAATGAAGAGATGAAAGCTAGGGCAAGAGGAGACATGCCTGGAGAACCACGTGCTTCAGTTTTGGACAAGGTTAAGTTAGGAGAGCCTGGATACAAGGAAAGGTATTATGCTGAAAAATTTGGTGCATTGGATCCGGAGAAGATTGACAAAATCAAGAAAGATACAGTCTTAAAATATGTAGAAGGCCTTTGTTGGGTTTGTCGGTACTACTACCAGGGTGTCTGCTCATGGCAATGGTACTACCCATACCATTATGCTCCTTTTGCTTCTGATCTTAAAGATCTAGCTGATCTGGAGATAACATTTTTTTTGGGAGAACCATTTAAACCATTTGATCAGCTAATGGGGACCCTACCCGCTTCAAGTTCAAGTGCACTGCCTAAAAAATATAGGGATTTGATGATTGATCCTTCATCATCTATTCTTCAATTCTACCCTGCTGATTTTGAGATTGACATGAATGGAAAACGATTTGCATGGCAGGGTGTTGCCAAGTTGCCATTCATTGATGAGAAGAAATTGCTTTCTGCCACAAGCAAGCTTGAAGCCACATTAACGGAGGAAGAACAGCTCCGAAATAGTAAGATGCTTGATTTGCTCTATGTCAGCAGTGCGCATAATTTGGCTCCACATATCTTATCATATTATCAATATTCTTGTCAATTGCCTCTGCATGAAAGACCTGCTCAACCAATTGATCCAAGAGTTAGTGATGGTATGAATGGATATCTCTGGTTGTATGAAAGGAATGTGCTCAGAACCATTGTATCCTCTCCTATCAAGGGATTGCAAGACATTGAGTTTAATCAAGTTTTAAACATTACTTATCTTAATCCTCGTAAACATAGACATATTCCAAAAGCTCCGGATGGTGTACTAATGCCAAAAAAGATATTAAAAGCCATTGATATTAAACCTTTTCCTGTGTTATGGCATGAAGAGAATAGTGGTCGGCGACAAGGCAGAGAAAGACAAGTACATGGAGCAATGGCTGGCCCTCAACTGGGAGAAGCAGCACATCGTCTTGTCAAGAACTCCCTTAACATTAAATCAAATAACATGCCGTATGGATCACCGGAGCAGTTTCCTGGCCATCATGCAATGAACCGGCTCAGATCAGCTGGCCCTTCTGGATATGGAAAATATTATGTCGAGGACAAAAGTGGTTATTACGGACAACAAAACAATCACCAGGGGATGATAACTAGGCCTAGATATCCGGTCTCATCTAATGGTGGAAATAATGAGAAACAGAATTTTAGGATACAGGATAGGTCACAGCATCATGAACAGTACTACAACGGGAGAACTGGGTTTCATACTATGACAATGGAGGAAGGTGCAAGACCTAGGCCATATGCAGTGCCTTCGCCAAGGACACAGGTGGTGATGTTATCGAGGTCACCCAATTCAGGGCCAACAACTAATGGACAACACCAATTTGTGCAGAACATGGGTCCTCCTATACCACCTCCAAATTGGATTACTAGAGCACCAGATACGAATGGAATATATGCTTGGCATCAAGAAACTGCATTGGGAGGAGCTTATGATAAGCAGCACATAAAGGTGTACCAAGCTAAAACTCGACAACCCCAAGACATGCCAGAGTACGGGAATCAATAG
Predicted protein sequences of Glyma.19g242400
>Glyma.19g242400.1.p sequence-type=predicted peptide transcript=Glyma.19g242400.1 locus=Glyma.19g242400 ID=Glyma.19g242400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVPAFYRWLADRYPLSITDVVEEDPSAGAVDVSKPNPSGMEFDNLYLDMNGIIHPCFHPDGKPAPATYEDVFKSIFDYIDHIFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDAAEKDAAEAEAEIERLREEFEGEMKLLSSKDKPETYDSNVITPGTPFMGVLSVALQYYIQTRLNYNPGWWNTKVILSDSNVPGEGEHKIMDYIRLQRNLPGFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVITFPGQQEKCFQCGQLGHFAAECRGKPGEKAEDWNPVDDTPIHKKKYQFLNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGALNLLMHIYRKEFTAMGGYLTEAGEVFLERVEHFIQSVAVHEDQIFQKRVRIQQATEINEEMKARARGDMPGEPRASVLDKVKLGEPGYKERYYAEKFGALDPEKIDKIKKDTVLKYVEGLCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALPKKYRDLMIDPSSSILQFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLSATSKLEATLTEEEQLRNSKMLDLLYVSSAHNLAPHILSYYQYSCQLPLHERPAQPIDPRVSDGMNGYLWLYERNVLRTIVSSPIKGLQDIEFNQVLNITYLNPRKHRHIPKAPDGVLMPKKILKAIDIKPFPVLWHEENSGRRQGRERQVHGAMAGPQLGEAAHRLVKNSLNIKSNNMPYGSPEQFPGHHAMNRLRSAGPSGYGKYYVEDKSGYYGQQNNHQGMITRPRYPVSSNGGNNEKQNFRIQDRSQHHEQYYNGRTGFHTMTMEEGARPRPYAVPSPRTQVVMLSRSPNSGPTTNGQHQFVQNMGPPIPPPNWITRAPDTNGIYAWHQETALGGAYDKQHIKVYQAKTRQPQDMPEYGNQ*






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