SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g240400

Feature Type:gene_model
Chromosome:Gm19
Start:48827949
stop:48831447
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g240400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08830.1AT copper/zinc superoxide dismutase 1 JGI N/AIEA
GO:0006801GO-bp superoxide metabolic process EnsemblGenomesN/AIEA
GO:0006801GO-bp superoxide metabolic process JGI N/AIEA
GO:0019430GO-bp removal of superoxide radicals EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005615GO-cc extracellular space EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004784GO-mf superoxide dismutase activity EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016209GO-mf antioxidant activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG0441 KOG Cu2+/Zn2+ superoxide dismutase SOD1 JGI N/AIEA
PTHR10003Panther SUPEROXIDE DISMUTASE [CU-ZN]-RELATED JGI N/AIEA
PF00080PFAM Copper/zinc superoxide dismutase (SODC) JGI N/AIEA
DETOX1-PWYSoyCyc9 superoxide radicals degradation Plant Metabolic Network ISS
DETOX1-PWY-1SoyCyc9 reactive oxygen species degradation Plant Metabolic Network ISS
GN7V-67551SoyCyc9-rxn superoxide dismutase Plant Metabolic Network ISS

Proteins Associated with Glyma.19g240400
LocusGene SymbolProtein Name
SOD1 superoxide dismutase [Cu-Zn]
SOD Super Oxide Dismutase

Expression Patterns of Glyma.19g240400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g240400
ParalogEvidenceComments
Glyma.03g242900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g240400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g42890 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g240400
>Glyma.19g240400.2 sequence-type=transcript locus=Glyma.19g240400 ID=Glyma.19g240400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGAAAGCGATGAGGTGGCAAATGGTTAGTAGAAATGCTAATAGTTGTGGAGGACCTCGTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGATTCCAACTAATCTGAAAAGATCAAAAAGCAACATATTTATCTGATTCCAAATTTCAAATTTCTGATTATTTTTACAATCCCAGTGTGAAAAGTAATATATATTTTTTGAATAAGCAATAAAAGTAATCTTTTTAGCATTACAAAGAAGTAATTGATAGATGACAGATAATCTGGAGGTTCTACAAGAAACTTTTCCATATTTTGAAATGATGTTTGGTAATTGAGATTACTTGCGTTCTATTTTGGTGATAGTTCATCTTTGAAAGAACTTGTCTATTTTGCCTATCATACCACATGCTTGTTTGGTCTTTATTTTAAAATGGTTTTATCTCATTGTGTAACTCAAGGTACCGTTAGCTTCAGTATTACCGACAGTCAGGTATGTTACTCATTTCCAAATCAAATCTCTGTTGAATTCTTCTAGGTTGACACCAAGACTTGGGAAGTTTCAATTTTTAACTAGTAAATTTGTACAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAGGTTGGAACCGTGCTTTAGAATTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTGTACGGCTGAATTCTGTGTTTTGCTTGTATCGTATCTGAGGGTTATATGTAGACACTTGATGCTTAATCAAATTGTTACTTTGCCTGAAGTATGTGTTAGTGGTTATCCTTATTTCTTGTATTAGTTTGTGCTTGAAATATGATATGATACTCGAGAAATGTGAGATTTTTCTGATGACTTGAGGCTATGATTAGATTGGTAACAGAGaatgaaatgaaatgaattggaaaataatgagatggaatggaataaaaATGTCATTTTATTGTTTGGAT

>Glyma.19g240400.3 sequence-type=transcript locus=Glyma.19g240400 ID=Glyma.19g240400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGAAAGCGATGAGGTGGCAAATGGTTAGTAGAAATGCTAATAGTTGTGGAGGACCTCGTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACCGTTAGCTTCAGTATTACCGACAGTCAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAGGTTGGAACCGTGCTTTAGAATTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTGTACGGCTGAATTCTGTGTTTTGCTTGTATCGTATCTGAGGGTTATATGTAGACACTTGATGCTTAATCAAATTGTTACTTTGCCTGAAGTATGTGTTAGTGGTTATCCTTATTTCTTGTATTAGTTTGTGCTTGAAATATGATATGATACTCGAGAAATGTGAGATTTTTCTGATGACTTGAGGCTATGATTAGATTGGTAACAGAGaatgaaatgaaatgaattggaaaataatgagatggaatggaataaaaATGTCATTTTATTGTTTGGAT

>Glyma.19g240400.4 sequence-type=transcript locus=Glyma.19g240400 ID=Glyma.19g240400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAGGTTGGAACCGTGCTTTAGAATTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTGTACGGCTGAATTCTGTGTTTTGCTTGTATCGTATCTGAGGGTTATATGTAGACACTTGATGCTTAATCAAATTGTTACTTTGCCTGAAGTATGTGTTAGTGGTTATCCTTATTTCTTGTATTAGTTTGTGCTTGAAATATGATATGATACTCGAGAAATGTGAGATTTTTCTGATGACTTGAGGCTATGATTAGATTGGTAACAGAGaatgaaatgaaatgaattggaaaataatgagatggaatggaataaaaATGTCATTTTATTGTTTGGAT

>Glyma.19g240400.5 sequence-type=transcript locus=Glyma.19g240400 ID=Glyma.19g240400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGAAAGCGATGAGGTGGCAAATGGTTAGTAGAAATGCTAATAGTTGTGGAGGACCTCGTGGCGTGCTAACACACACGCCTCACTCGCTATAAATAAAAAAACAATAAACCCACTCTGCTTCCCATCATCCGTCTTCTAGACTCTTCTTTTTCTCTAAGTCTAAGGGGTGCCCTGAGATCACTTTGAGCAATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGATTCCAACTAATCTGAAAAGATCAAAAAGCAACATATTTATCTGATTCCAAATTTCAAATTTCTGATTATTTTTACAATCCCAGTGTGAAAAGTAATATATATTTTTTGAATAAGCAATAAAAGTAATCTTTTTAGCATTACAAAGAAGTAATTGATAGATGACAGATAATCTGGAGGTTCTACAAGAAACTTTTCCATATTTTGAAATGATGTTTGGTAATTGAGATTACTTGCGTTCTATTTTGGTGATAGTTCATCTTTGAAAGAACTTGTCTATTTTGCCTATCATACCACATGCTTGTTTGGTCTTTATTTTAAAATGGTTTTATCTCATTGTGTAACTCAAGGTACCGTTAGCTTCAGTATTACCGACAGTCAGGTATGTTACTCATTTCCAAATCAAATCTCTGTTGAATTCTTCTAGGTTGACACCAAGACTTGGGAAGTTTCAATTTTTAACTAGTAAATTTGTACAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTATCCACTAATCTGTTTTTATTCCTTGCTATCAGAGTCATTGGACATCCACTTATGATATTCTGTCTTAATTCTGTTTGGATTTGGATCCTTTCATGTTAGTAAAGAACATGAGATTGCCTTGTAAGGAGAGAAAATTATAGTATCTCGCCATGATTTACGTAGGGCCCATTAACTTAAATGTGTCTTCCTCTCGTTCATTTTCCTTGCTAGCATAAGAGGATCTTGATC
Coding sequences of Glyma.19g240400
>Glyma.19g240400.1 sequence-type=CDS polypeptide=Glyma.19g240400.1.p locus=Glyma.19g240400 ID=Glyma.19g240400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACCGTTAGCTTCAGTATTACCGACAGTCAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma.19g240400.2 sequence-type=CDS polypeptide=Glyma.19g240400.2.p locus=Glyma.19g240400 ID=Glyma.19g240400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGA

>Glyma.19g240400.3 sequence-type=CDS polypeptide=Glyma.19g240400.3.p locus=Glyma.19g240400 ID=Glyma.19g240400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACCGTTAGCTTCAGTATTACCGACAGTCAGATTCCTCTCACTGGACCAAACTCCATCATAGGAAGGGCTGTTGTTGTCCATGCTGATTCTGATGACCTTGGAAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma.19g240400.4 sequence-type=CDS polypeptide=Glyma.19g240400.4.p locus=Glyma.19g240400 ID=Glyma.19g240400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma.19g240400.5 sequence-type=CDS polypeptide=Glyma.19g240400.5.p locus=Glyma.19g240400 ID=Glyma.19g240400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCAGTTCTTGGCAGCAGCGAGGGTGTCACTGGAACTATTTTCTTCACTCAGGAGGGAAATGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGCTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTGTCAACTGGAGCGCATTTCAATCCTAATAACAACGAGCACGGTGCCCCTGAGGACGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTTGTTAATGTCGGTGATGATGGTACGTCTGATCTATTATTTTTTCTTCTGTTTCATCTATTTGATTAGTGATTGA
Predicted protein sequences of Glyma.19g240400
>Glyma.19g240400.1.p sequence-type=predicted peptide transcript=Glyma.19g240400.1 locus=Glyma.19g240400 ID=Glyma.19g240400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma.19g240400.2.p sequence-type=predicted peptide transcript=Glyma.19g240400.2 locus=Glyma.19g240400 ID=Glyma.19g240400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTSDLLFFLLFHLFDLLMSVMMVRLIYYFFFCFIYLISD*

>Glyma.19g240400.3.p sequence-type=predicted peptide transcript=Glyma.19g240400.3 locus=Glyma.19g240400 ID=Glyma.19g240400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma.19g240400.4.p sequence-type=predicted peptide transcript=Glyma.19g240400.4 locus=Glyma.19g240400 ID=Glyma.19g240400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma.19g240400.5.p sequence-type=predicted peptide transcript=Glyma.19g240400.5 locus=Glyma.19g240400 ID=Glyma.19g240400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTSDLLFFLLFHLFDLLMSVMMVRLIYYFFFCFIYLISD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo