SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g238600

Feature Type:gene_model
Chromosome:Gm19
Start:48725379
stop:48727458
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g238600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52580.1AT Ribosomal protein S11 family protein JGI N/AIEA
GO:0000028GO-bp ribosomal small subunit assembly EnsemblGenomesN/AIEA
GO:0000462GO-bp maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0022627GO-cc cytosolic small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0048027GO-mf mRNA 5'-UTR binding EnsemblGenomesN/AIEA
GO:0070181GO-mf small ribosomal subunit rRNA binding EnsemblGenomesN/AIEA
KOG0407 KOG 40S ribosomal protein S14 JGI N/AIEA
PTHR11759Panther 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 JGI N/AIEA
PF00411PFAM Ribosomal protein S11 JGI N/AIEA

Expression Patterns of Glyma.19g238600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g238600
ParalogEvidenceComments
Glyma.03g241300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g238600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g42700 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g238600
>Glyma.19g238600.1 sequence-type=CDS polypeptide=Glyma.19g238600.1.p locus=Glyma.19g238600 ID=Glyma.19g238600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGAGGAGAAAGGTTAGAGAGCCAAAGGAGGAAAACGTGACTCTGGGCCCAGCTGTTAGAGATGGTGAACATGTTTTTGGAGTCGCTCGCATCTTTGCCTCCTTCAATGACACCTTCATTCATGTCACTGATCTGTCTGGGAGGGAAACACTTGTCCGCATCACTGGCGGGATGAAGGTTAAAGCTGACAGAGATGAATCATCTCCATATGCTGCTATGCTTGCTGCGCAGGATGTTGCTGCTAGATGCAAGGAACTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCCACAGGTGGAAACAAGACAAAAACACCAGGTCCTGGTGCTCAATCAGCTCTTCGAGCCCTTGCTCGTTCAGGAATGAAAATTGGTCGCATAGAGGATGTGACCCCCATTCCTTCCGATAGCACACGGAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTAA
Predicted protein sequences of Glyma.19g238600
>Glyma.19g238600.1.p sequence-type=predicted peptide transcript=Glyma.19g238600.1 locus=Glyma.19g238600 ID=Glyma.19g238600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo