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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05510.1 | AT | Phospholipid/glycerol acyltransferase family protein | JGI | N/A | IEA |
| GO:0006644 | GO-bp | phospholipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0031224 | GO-cc | intrinsic component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0008374 | GO-mf | O-acyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | JGI | N/A | IEA |
| KOG2847 | KOG | Phosphate acyltransferase | JGI | N/A | IEA |
| PTHR12497 | Panther | TAZ PROTEIN (TAFAZZIN) | JGI | N/A | IEA |
| PF01553 | PFAM | Acyltransferase | JGI | N/A | IEA |
| PWY-6803 | SoyCyc9 | phosphatidylcholine acyl editing | Plant Metabolic Network | ISS | |
| PWY-7416 | SoyCyc9 | phospholipid remodeling (phosphatidylcholine, yeast) | Plant Metabolic Network | ISS | |
| TRIGLSYN-PWY | SoyCyc9 | diacylglycerol and triacylglycerol biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-66036 | SoyCyc9-rxn | 1-acylglycerophosphocholine O-acyltransferase | Plant Metabolic Network | ISS |
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Glyma.19g233400 not represented in the dataset |
Glyma.19g233400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g235600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g42160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g233400.1 sequence-type=CDS polypeptide=Glyma.19g233400.1.p locus=Glyma.19g233400 ID=Glyma.19g233400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCCCTTCTCGATCGCGGTGATGTTTGGAAGAGCAAGGCGCGATCCTTGCAGCTACAGTTCCGGGACCGTTTCCGGGTCGCCGTCGACCACCATTGGCGCCGCCGACACCACCACACCTTTATCCCCTCTGCCGATGGCTACTTCTCCTCCACCATTCAACGCTGCCTCAGCCGATTTCGTGATTTCCGAAGGGATTCATTGCCTTCTTCCACCTCTTTCTATCGTAAACGAGTGATTAAGGATTTCAGTTCTGAGGAAGATTCAGCTCTTGTTCGTACGATGCAAGCTGTTGCGGTTCCTGTTCTTGGAAATGTCTGTCACGTGTTTATGAACGGATTAAACCAGGTGCAGGTGTATGGTTTAGAAAAACTGCACTCCGCGTTGCTGCATAGACCTAAGGGCAAACCTCTTCTTACGGTCAGCAATCATGTTGCTTCCATGGATGATCCGCTTGTTATCGCTTCGCTGCTTCCTCCGAGTGTTCTCTTGGATGCTAGGAATCTCAGATGGACTCTTTGTGCCACTGATAGGTGTTTTAAAAACCCCGTGACTTCTGCATTCTTTCGATCAGTCAAGGTCTTGCCAGTTTCTCGGGGTGACGGGATTTATCAGGAGGGAATGGACTTGGCCCTTTCAAAATTGAACCATGGTGGTTGGGTCCACATATTCCCAGAAGGTAGTCGCTCCCGGGATGGTGGAAAAACAATGGGCTCTTCCAAGAGAGGTGTTGGGAGGTTAGTCCTGGATGGAGATAGCATGCCCCTTGTTGTCCCATTTGTACATACAGGGATGCAGGAGATTATGCCTGTAGGTGCTAACTTTCCCAGAATAGGCAAGATGGTTACAGTGCTCATTGGTGATCCGATAAATTTTGACGATATACTTGAATTTGACATGGAGAAGGGCTCGAATGTGCCCAGAAGACGACTATTTGATGCAGTAGCATCTAGAATTGGTGATAGGTTGCATGAGATGAAGGTCCAGGTTGACACTATCGCCATTGAACAAGAAATGCAGCTACAAGATAACTCCTCACACAGCACTGACCGAACATCTGAAATATTGCAGCAGGTTGATTGGGAATTATTTGGAATGGATAGCTTCATGTCTGTAGAAGATGATTCCAAGCAGAGACAAGAAACAGTTCTCCTCCGAAATGTTAGTGTTTCTCAGCATCATCAAAAATCTCATAGTGATCAGAGTTGGAGAGCTGGGTTCTCATACAGGATGCGTGATTATATTGATCAGATGGAGCTTGTGTCTTTTGCTGCGAGAGGTATATTTATGAATAATGAAACGAAGAACTCTGCTGGCCGTAGCAGAGAGATGGGCCCCTTAAAGGCATGGAAGCAGTTTTTGGAAGCTAATCTATTAAGGCAGTGGAATTACGTCCATTACTGA
>Glyma.19g233400.1.p sequence-type=predicted peptide transcript=Glyma.19g233400.1 locus=Glyma.19g233400 ID=Glyma.19g233400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPLLDRGDVWKSKARSLQLQFRDRFRVAVDHHWRRRHHHTFIPSADGYFSSTIQRCLSRFRDFRRDSLPSSTSFYRKRVIKDFSSEEDSALVRTMQAVAVPVLGNVCHVFMNGLNQVQVYGLEKLHSALLHRPKGKPLLTVSNHVASMDDPLVIASLLPPSVLLDARNLRWTLCATDRCFKNPVTSAFFRSVKVLPVSRGDGIYQEGMDLALSKLNHGGWVHIFPEGSRSRDGGKTMGSSKRGVGRLVLDGDSMPLVVPFVHTGMQEIMPVGANFPRIGKMVTVLIGDPINFDDILEFDMEKGSNVPRRRLFDAVASRIGDRLHEMKVQVDTIAIEQEMQLQDNSSHSTDRTSEILQQVDWELFGMDSFMSVEDDSKQRQETVLLRNVSVSQHHQKSHSDQSWRAGFSYRMRDYIDQMELVSFAARGIFMNNETKNSAGRSREMGPLKAWKQFLEANLLRQWNYVHY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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