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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05520.2 | AT | Subunits of heterodimeric actin filament capping protein Capz superfamily | JGI | N/A | IEA |
| GO:0030036 | GO-bp | actin cytoskeleton organization | JGI | N/A | IEA |
| GO:0051016 | GO-bp | barbed-end actin filament capping | EnsemblGenomes | N/A | IEA |
| GO:0051693 | GO-bp | actin filament capping | EnsemblGenomes | N/A | IEA |
| GO:0008290 | GO-cc | F-actin capping protein complex | EnsemblGenomes | N/A | IEA |
| GO:0008290 | GO-cc | F-actin capping protein complex | JGI | N/A | IEA |
| GO:0071203 | GO-cc | WASH complex | JGI | N/A | IEA |
| GO:0003779 | GO-mf | actin binding | EnsemblGenomes | N/A | IEA |
| GO:0003779 | GO-mf | actin binding | JGI | N/A | IEA |
| KOG0836 | KOG | F-actin capping protein, alpha subunit | JGI | N/A | IEA |
| PTHR10653 | Panther | F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA | JGI | N/A | IEA |
| PTHR10653:SF0 | Panther | CAPPING PROTEIN (ACTIN FILAMENT) MUSCLE Z-LINE, ALPHA 1-RELATED | JGI | N/A | IEA |
| PF01267 | PFAM | F-actin capping protein alpha subunit | JGI | N/A | IEA |
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Glyma.19g233300 not represented in the dataset |
Glyma.19g233300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g235500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g42150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g233300.1 sequence-type=CDS polypeptide=Glyma.19g233300.1.p locus=Glyma.19g233300 ID=Glyma.19g233300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGAAGAAGAAGAAGAAGAAGAATCAGAGCTCAGCGATAAGCAGAAAGTGGAAATCGCGAAATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCGAGGCTTTTCTCTTTTACAACAAATCGCACTTGATTTCCCTTCCAATGTCCAACCGAAGCGGAGACGTACTGGTTACTTCTTTTGGTGAGCTTGAGGGTAATGCATTTCTTGAACCTAGGACTGCGCAAGTAGCAATTGTTGATCATGTTAAACAAGTTTGTACAGAGGTGAGACCTGCCACAGACGAAGAACTTCCATCTCCATATATCGAAGAATTTCGATGCAATCTGGATGCTGAAATACTTAAATATGTTGAAGAAACTTATCCAAAAGGTTTCTGCTCTGTCTACTGTGTAAGTGGGAAGGATGTAGAGGGCCCGGGTGCTGATTTTGAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAAACAGTGGAAGTAAAGGGTAAAATGCAGGTTGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATGCAACTCTTTTTCAGGCTCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGGCATCATATCTAAACCTTCCTGATTCTACTTTCAAGGATCTTCGGAGAAAGCTTCCCGTCACCCGCACCTTATTTCCATGGCATAATACTTTGCAATTCAGCTTGACAAGAGACATCACAAAAGAACTTGGCATTGGAAAGTAA
>Glyma.19g233300.1.p sequence-type=predicted peptide transcript=Glyma.19g233300.1 locus=Glyma.19g233300 ID=Glyma.19g233300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAEEEEEEESELSDKQKVEIAKWFLLNSPPGEIQYVAKDVKSILNNDDLYKEAASEAFLFYNKSHLISLPMSNRSGDVLVTSFGELEGNAFLEPRTAQVAIVDHVKQVCTEVRPATDEELPSPYIEEFRCNLDAEILKYVEETYPKGFCSVYCVSGKDVEGPGADFELAVVISAARHSPQNFCNGSWCSVWNIEFKDEKQTVEVKGKMQVGAHYFEEGNVQLDAKHECKDATLFQAPEDCALAITSIIRHHETEYLASLEASYLNLPDSTFKDLRRKLPVTRTLFPWHNTLQFSLTRDITKELGIGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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