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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14520.1 | AT | pescadillo-related | JGI | N/A | IEA |
| GO:0000463 | GO-bp | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0000466 | GO-bp | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | JGI | N/A | IEA |
| GO:0042273 | GO-bp | ribosomal large subunit biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005654 | GO-cc | nucleoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
| GO:0005730 | GO-cc | nucleolus | JGI | N/A | IEA |
| GO:0030687 | GO-cc | preribosome, large subunit precursor | EnsemblGenomes | N/A | IEA |
| GO:0070545 | GO-cc | PeBoW complex | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0043021 | GO-mf | ribonucleoprotein complex binding | EnsemblGenomes | N/A | IEA |
| KOG2481 | KOG | Protein required for normal rRNA processing | JGI | N/A | IEA |
| PTHR12221 | Panther | PESCADILLO - RELATED | JGI | N/A | IEA |
| PTHR12221:SF6 | Panther | PESCADILLO HOMOLOG | JGI | N/A | IEA |
| PF00533 | PFAM | BRCA1 C Terminus (BRCT) domain | JGI | N/A | IEA |
| PF06732 | PFAM | Pescadillo N-terminus | JGI | N/A | IEA |
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Glyma.19g232500 not represented in the dataset |
Glyma.19g232500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g234900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g42070 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g232500.1 sequence-type=CDS polypeptide=Glyma.19g232500.1.p locus=Glyma.19g232500 ID=Glyma.19g232500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGAAGCACTACAGACCCCCGGGGAAGAAAAAGGAGGGAAATGCTGCCAAATTTGTCATTAGGTCACAAGCAATCAAGCAGCTTCAAATCAGTCTACCCCTTTTCAGGAAACTATGTATTTTGAAAGGTGTAACTCCAAGGGAGCCTAAGAAAAAGTTCAAGGGAACTCATCAGACTTATTACCATGTCAAGGATGTTTCCTTCCTTCATCACGAGCCTTTGGTTGAAATACATAGAGCAATACGAGTGCATGAGAGGAAAATAAAGAAAGCCGAGGCAAAGAAAAACCATGAACGTGCAAACAGGCTGCGCCAGAAAACACCCAAACCCAAGATCGATAGGATTATTCGGCAGAGGTACCCGAGATTTGTGGATGCACTTGGAGAATTGGATGACTGCCTTACAATGGTGCACCTTTTTGCAGCATTGCCTGCATCAGAGAGTAAAAAAATTGACGTGGAGTGTGTCCATAAATGTCGAAGATTGGCACATGAATGGCAAGCATTCGTATCTCGCACTCACAAGTTAAGAAAAACATTTGTATCTGTGAAAGGCATATACTACCAGGCTGAGGTCGAGGGCCAGCCAATAACATGGTTAACTCCTCATTCACTACAACAGGTTGTATCCGATGATGTTGACATTACTACCATGCTAAACTTTCTGCAATTGTATGAGCCTCTTCTTAGTTTTGTCAATTTCCGCCTCTACCATTCTATAAATTTGAAGTATCCCCCCATACTTGATCCTCGGTTGGAAGCTTTGGCAGCAGATCTATATGCTCTGTCAAGGTATGCCAGTGCCAATACCAGACCCTCTGTACTGAATTCTGAAGCTTCTCAAGCTGAATCTGAACAAGTGGAGACCAAGCAAAAGGAGGCAGAGACTGGAAATGAAACATCTGAACTAAGACTTGCTCAACTTCAGCATCAACTTCCTTCTAATGAACCTGGTGCACTAATGCATCTTGTTGAGGAAGTGACTGGTGAAGATGAAGAGGATCAGGATACAAAAGACTGTAAAAAGCTCTTTAAAAATATGAAATTCTTCGTAAGCAGGGAGGTACCAAGGGAATCGATGCTTTTTGTTATTCCTGCTTTTGGTGGCATAGTTTCCTGGGAGGGAGAAGGGGCACCTTTTGGGGAATCTGACCAGAGCATTTCTCATCAGATTGTTGACAGGGAAGCACAAGGACATCGGTTCCTCTCAAGAGAATACGTTCAACCACAGTGGGTATATGACTGTGTGAATGCACGAATTATTTTGCCAACTGACAATTATTTGGTGGGAAGGACTCCTCCACCACATTTGTCACCTTTTATTAACTACGACGAAGAAGGAGCATACATTCCTGATTATGCAAAGACCATTAAACACTTGCAAGCTGCTGCCAGAAAGGAAATCCTTCCACTTCCAGGTGTTGGGAAGGATGCTCTGGAAGATCCTCAAAATCTTCTGGTTGAAGGTATCATTGATCGAGCAGAGGCTAATGATGCAGCTCAGAGAAAGCAGAAGATGATGATTCTGGAGCAGCAATACCGTGATGATTTGAAAAAAGAACTTCAAGGTATTACATGTACCTCAGCAGGTTCTATAGAAACATCTACTGAAGTGGTACAGACTGGAGAATCAACTACCAGTGTTCATGAAAATGTTGATCATGATGACATGGGTAAACTTATGTTGTCACGTAAAAGGAGGGGGCTAGTGAAAGCCATTGAGAAATCTAGGGAACGGAATAAAGCTCAGACTGATCTCATTAAACAACGGAAAAAGAAAATTGATGAAGAGCAACGGCAAAGGAGTTGA
>Glyma.19g232500.1.p sequence-type=predicted peptide transcript=Glyma.19g232500.1 locus=Glyma.19g232500 ID=Glyma.19g232500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVKHYRPPGKKKEGNAAKFVIRSQAIKQLQISLPLFRKLCILKGVTPREPKKKFKGTHQTYYHVKDVSFLHHEPLVEIHRAIRVHERKIKKAEAKKNHERANRLRQKTPKPKIDRIIRQRYPRFVDALGELDDCLTMVHLFAALPASESKKIDVECVHKCRRLAHEWQAFVSRTHKLRKTFVSVKGIYYQAEVEGQPITWLTPHSLQQVVSDDVDITTMLNFLQLYEPLLSFVNFRLYHSINLKYPPILDPRLEALAADLYALSRYASANTRPSVLNSEASQAESEQVETKQKEAETGNETSELRLAQLQHQLPSNEPGALMHLVEEVTGEDEEDQDTKDCKKLFKNMKFFVSREVPRESMLFVIPAFGGIVSWEGEGAPFGESDQSISHQIVDREAQGHRFLSREYVQPQWVYDCVNARIILPTDNYLVGRTPPPHLSPFINYDEEGAYIPDYAKTIKHLQAAARKEILPLPGVGKDALEDPQNLLVEGIIDRAEANDAAQRKQKMMILEQQYRDDLKKELQGITCTSAGSIETSTEVVQTGESTTSVHENVDHDDMGKLMLSRKRRGLVKAIEKSRERNKAQTDLIKQRKKKIDEEQRQRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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