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Report for Sequence Feature Glyma.19g229700

Feature Type:gene_model
Chromosome:Gm19
Start:48069220
stop:48070638
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g229700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56300.1AT Chaperone DnaJ-domain superfamily protein JGI N/AIEA
PTHR24077Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24077:SF66Panther JGI N/AIEA
PF00226PFAM DnaJ domain JGI N/AIEA

Expression Patterns of Glyma.19g229700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g229700
ParalogEvidenceComments
Glyma.03g232700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g229700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g41760 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g229700
>Glyma.19g229700.2 sequence-type=transcript locus=Glyma.19g229700 ID=Glyma.19g229700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATCTTCTAGTTCTTCTTCCCCATGTCCAAGCCAAGGCATCTCGAAGTTTCTTCCGATATATCTATCTATCTTTACCCCACGAATGAGAAGATTTTTTTTTCTCTCTCCTCTTCGCCGCTACATAAAGTCTTTCCTCTGCCTCATTATTTTACTCTTGTCTCCCCAGCATTCATATTAATATCATGCCCTCCTTCTGCATCCAAACCTTCATTTTGTAGTGGGTGGGGGTTTCTCATTTCTCTGCCGTTCCATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAGTGTGCCGTACTGAATCCGTCTTGTAATTTTCTTACTTGACATTGGATGATGATTGAAATGAAAATCCTTTTGGTGGGATTAAATTAAATTTGCTGAACAACTACTAGTACATTAGTAATGCTCTTCCTTAGTTATGGAACAATACAATACACCAAGTGCAACTGTGCAAATTGTGCTTTGCATTCTAGTACTGCCCCGGGGCTGCttctttttttttttttttttcttttttCCTGCCAAAAATATAATACTAATTCAGATCAGATGATTAACATTTTCTTGC

>Glyma.19g229700.3 sequence-type=transcript locus=Glyma.19g229700 ID=Glyma.19g229700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGTCTCCCCAGCATTCATATTAATATCATGCCCTCCTTCTGCATCCAAACCTTCATTTTGTAGTGGGTGGGGGTTTCTCATTTCTCTGCCGTTCCATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGTCCGTAAAGTTTTTTCATTTCAGTTTTTTAATTACTATTTTTATTGTAATTTAGGCAAAAAAAAATGTTTTTTTTTTTTTTAAATGAGCAGGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAGTGTGCCGTACTGAATCCGTCTTGTAATTTTCTTACTTGACATTGGATGATGATTGAAATGAAAATCCTTTTGGTGGGATTAAATTAAATTTGCTGAACAACTACTAGTACATTAGTAATGCTCTTCCTTAGTTATGGAACAATACAATACACCAAGTGCAACTGTGCAAATTGTGCTTTGCATTCTAGTACTGCCCCGGGGCTGCttctttttttttttttttttcttttttCCTGCCAAAAATATAATACTAATTCAGATCAGATGATTAACATTTTCTTGC
Coding sequences of Glyma.19g229700
>Glyma.19g229700.1 sequence-type=CDS polypeptide=Glyma.19g229700.1.p locus=Glyma.19g229700 ID=Glyma.19g229700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAG

>Glyma.19g229700.2 sequence-type=CDS polypeptide=Glyma.19g229700.2.p locus=Glyma.19g229700 ID=Glyma.19g229700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGACTTTTGTGACTTCATGCAAGAGATGATCTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGAGATGGTGGGGGAAGATCATGGCCATGGGATCGGCTTTGACTTGAACCAGGATCAGACGGCTGGGAAGCGAGGACGCGTAAATGGATCAAAGGGCAACGCGCCCAAGCGCAGCAACTCCCGCAGTTAG

>Glyma.19g229700.3 sequence-type=CDS polypeptide=Glyma.19g229700.3.p locus=Glyma.19g229700 ID=Glyma.19g229700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGGGAAGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCAGAATCCTGCAACCGCTGGCGAAGCCAAGCGGCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGTCCGTAAAGTTTTTTCATTTCAGTTTTTTAATTACTATTTTTATTGTAATTTAGGCAAAAAAAAATGTTTTTTTTTTTTTTAA
Predicted protein sequences of Glyma.19g229700
>Glyma.19g229700.1.p sequence-type=predicted peptide transcript=Glyma.19g229700.1 locus=Glyma.19g229700 ID=Glyma.19g229700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQQIQEAYSAVLSDQSKRSMYDAGLYDPLEEEDQDFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGEDHGHGIGFDLNQDQTAGKRGRVNGSKGNAPKRSNSRS*

>Glyma.19g229700.2.p sequence-type=predicted peptide transcript=Glyma.19g229700.2 locus=Glyma.19g229700 ID=Glyma.19g229700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQDFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGEDHGHGIGFDLNQDQTAGKRGRVNGSKGNAPKRSNSRS*

>Glyma.19g229700.3.p sequence-type=predicted peptide transcript=Glyma.19g229700.3 locus=Glyma.19g229700 ID=Glyma.19g229700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDREGGSNGGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQVRKVFSFQFFNYYFYCNLGKKKCFFFF*






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