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Report for Sequence Feature Glyma.19g226600

Feature Type:gene_model
Chromosome:Gm19
Start:47829848
stop:47833331
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g226600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56700.1AT Peptidase C15, pyroglutamyl peptidase I-like JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0016920GO-mf pyroglutamyl-peptidase activity EnsemblGenomesN/AIEA
KOG4755 KOG Predicted pyroglutamyl peptidase JGI N/AIEA
PTHR23402Panther PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED JGI N/AIEA
PF01470PFAM Pyroglutamyl peptidase JGI N/AIEA

Expression Patterns of Glyma.19g226600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g226600
ParalogEvidenceComments
Glyma.03g229300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g226600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g41440 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g226600
>Glyma.19g226600.2 sequence-type=transcript locus=Glyma.19g226600 ID=Glyma.19g226600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAAGAGAGGTTAAATCTCCACAAACGACAAATTTGTTACCTAAATAGATAAAAGAAAAAAATTGGAACAGCAACGTTTGTTGTTTGAAGATGACAGTGACAGCCGCACCCACATACATGTACTTGTATTATTTTGGTATTCGTATAAATGTTTTCCTCTTTCTCTCTTCTAAATCTAATTCGACTCTTGGCCAGTTAATAGAAACAAACTTTGGGTAGATAAGACTGCTGAATGTCTCATCTCTAATTATTGTATTTGGAAAATAGTTTTGAGTTGAGGATCTAATCATTACCAGATTTAATATATTTGACAAATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAGTACCATTACACTTAGACCCTCAAAAGTGGGAGCCCCTATATCTCTGTTCTGGTGTGATTATGCTTATGAAAGTGGATGAATGTACCTTGAATAAAATATTTATTATAATAAAAATATTGTATTTAAATGGAAACGGTTTAATGAAAATGGCATATGTAGTAGAGGGGCATTTGCTCTCATTGGTAAATGTTTCTGATTAAAGGTTCCAGCACATTGTGATGACAGTTTGATATCTTCAGTGGTTTACCTTGTGAATAAATGTTCATTTTCTTCATTCATCAATAAAGCAGCTTATATTTAAGCATTACAACTC

>Glyma.19g226600.3 sequence-type=transcript locus=Glyma.19g226600 ID=Glyma.19g226600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ctctctctctctctctctcAATCAAACTTCCGTTGCGTTTTCTCCTTCAATTTTGTTATTTTATGCCTCCTTGATCATTTGGGTGCGTGATCATCATCTTTTTCTTAATTTAATGTTGATGGGTTCTTGTGTTTACGGTTCTACTAGAATTCAGCAATGAACAAAGTGCTTTGCTTCCACCGCAACTGCTATTTATCTGAAAAGTATTTGGAAAATAGTTTTGAGTTGAGGATCTAATCATTACCAGATTTAATATATTTGACAAATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAGTACCATTACACTTAGACCCTCAAAAGTGGGAGCCCCTATATCTCTGTTCTGGTGTGATTATGCTTATGAAAGTGGATGAATGTACCTTGAATAAAATATTTATTATAATAAAAATATTGTATTTAAATGGAAACGGTTTAATGAAAATGGCATATGTAGTAGAGGGGCATTTGCTCTCATTGGTAAATGTTTCTGATTAAAGGTTCCAGCACATTGTGATGACAGTTTGATATCTTCAGTGGTTTACCTTGTGAATAAATGTTCATTTTCTTCATTCATCAATAAAGCAGCTTATATTTAAGCATTACAACTC
Coding sequences of Glyma.19g226600
>Glyma.19g226600.1 sequence-type=CDS polypeptide=Glyma.19g226600.1.p locus=Glyma.19g226600 ID=Glyma.19g226600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAG

>Glyma.19g226600.2 sequence-type=CDS polypeptide=Glyma.19g226600.2.p locus=Glyma.19g226600 ID=Glyma.19g226600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAG

>Glyma.19g226600.3 sequence-type=CDS polypeptide=Glyma.19g226600.3.p locus=Glyma.19g226600 ID=Glyma.19g226600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTCTGAAGGTCCTACGACACCGACGACAACAATTCATGTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGCCAATAATTTGACAGAGTACATGAATAAGAAGGGTTTGCCAAAGAGATTAGTTATTGGGAGCTCCAGCATTCTTGAGACTGCTGGTCAAGGAGCACTTGTGCCACTGTACCAGAGATTACAATCCGCGGTTAATGCCAAGGACTCTGAATCTTCAAATTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGGTGCGACAAGGTTTGCTATAGAGAAACAAGCTGTCAACGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCCATAGTTCCTTCGGATGGTGGAATTTCACGAACAAGGGAGACTACACTTCCTGTTGTGGAGATCACCAAAGCCTTGACAGAGAAGGGATATGAAGTTATGGTATCAGATGATGCAGGCAGGTTTGTGTGCAATTATGTTTACTATCATTCCCTTCGCTTTGCCGAGCAAAACGGGATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACAATAAATGAAGAGACTCAAATGCAATTCGCAGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTCAGTAG
Predicted protein sequences of Glyma.19g226600
>Glyma.19g226600.1.p sequence-type=predicted peptide transcript=Glyma.19g226600.1 locus=Glyma.19g226600 ID=Glyma.19g226600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETAGQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVEITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIPQ*

>Glyma.19g226600.2.p sequence-type=predicted peptide transcript=Glyma.19g226600.2 locus=Glyma.19g226600 ID=Glyma.19g226600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETAGQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVEITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIPQ*

>Glyma.19g226600.3.p sequence-type=predicted peptide transcript=Glyma.19g226600.3 locus=Glyma.19g226600 ID=Glyma.19g226600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETAGQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVEITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIPQ*






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