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Report for Sequence Feature Glyma.19g226300

Feature Type:gene_model
Chromosome:Gm19
Start:47809233
stop:47812801
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g226300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66460.1AT Glycosyl hydrolase superfamily protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0046355GO-bp mannan catabolic process EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
GO:0016985GO-mf mannan endo-1,4-beta-mannosidase activity EnsemblGenomesN/AIEA
PF00150PFAM Cellulase (glycosyl hydrolase family 5) JGI N/AIEA
GN7V-47127SoyCyc9-rxn mannan endo-1,4-β-mannosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g226300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g226300
ParalogEvidenceComments
Glyma.03g229100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g226300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g41410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g226300
>Glyma.19g226300.1 sequence-type=CDS polypeptide=Glyma.19g226300.1.p locus=Glyma.19g226300 ID=Glyma.19g226300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATTCCAAAACTTGGTGTTGATGGCTTTTATGATGACATTGATTGTTATTGGTCAATACGAACATTGCATGGCTACTGGTCGTCTTCATTTTCATCATCACTCACACAAAAACTTAACCACCAAAAAACTTCATGGTGGTTTCATTGAACGAAGTAACACCCATTTTTATCTCAATGGAAAACCACACTACTTAAATGGATTCAATTCGTATTGGTTAATGAATGTAGCATCCGATCCATCTACAAGTTCTAAGGTCAGTATAACTTTTCAAGAAGCTTCCCAACATGGTTTGAATGTAGCAAGAACTTGGGCATTCAACGATGGAGGTTACAATGCCCTTCAAATTTCTCCTGGTTCTTACAACGAGAATGTCTTCAAGGGATTGGATTTTGTAATTTCAGAAGCAGGAAAAAATGGGGTACGACTGATACTAAGTCTAGTAAATAACTGGAATGATTATGGTGGAAAGAGTCAGTATGTTCAATGGGCAAGAGAACGTGGTCAATATGTAAACAACGACGATGACTTCTTCTCACACCCCATTGTTAAGGAATACTACAAAAATCACGTCAAGACTATGCTGACAAGAAAGAATACTATAACTGGATTGACATATCAGAATGATCCAACAATTTTTGCATGGGAACTTATGAATGAACCTCGTTCCCAAAATGACTATTCTGGAAAATCAATTCAGGATTGGGTGAGGGAGATGGCTGCCTATGTGAAGTCTATTGATAACAATCATTTACTTGAAGTAGGACTTGAAGGATTTTATGGTGAATCAATGCCGGATAAGAAACAATTCAATCCTGGATATCAAGTAGGAACTGATTTCATTTCTAACAACCAAGTTCCTGAAATCGATTTCACCACCATCCATCTCTACCCTGATCAATGGGTATCAAACTCTAATGAAAGTGCTAAAGATGATTTTGTTAGCAAATGGGTCCAAGCCCATATCCAGGACTCAAACGACATTTTAGGAAAACCCATTCTTTTTACTGAGTTTGGAAAGTCTTCAAAGTCTTCAGGATACAGTGTTGATAAAAGGGACAATTACTTTGAAAAAATATACAATTTCATATTCAACAGTGCTAGCAATGGGGGACCATGTGCAGGTGGACTTTTTTGGCAACTAATGACACAGGGAATGGATGACTTGCATGATGGCAATGAAATCATCTGTGATGAGAATCCTTCAACTGCCAATGTCATCACTCAACAATCTAAAAAGATGTCAAATCTAGGATAA
Predicted protein sequences of Glyma.19g226300
>Glyma.19g226300.1.p sequence-type=predicted peptide transcript=Glyma.19g226300.1 locus=Glyma.19g226300 ID=Glyma.19g226300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFQNLVLMAFMMTLIVIGQYEHCMATGRLHFHHHSHKNLTTKKLHGGFIERSNTHFYLNGKPHYLNGFNSYWLMNVASDPSTSSKVSITFQEASQHGLNVARTWAFNDGGYNALQISPGSYNENVFKGLDFVISEAGKNGVRLILSLVNNWNDYGGKSQYVQWARERGQYVNNDDDFFSHPIVKEYYKNHVKTMLTRKNTITGLTYQNDPTIFAWELMNEPRSQNDYSGKSIQDWVREMAAYVKSIDNNHLLEVGLEGFYGESMPDKKQFNPGYQVGTDFISNNQVPEIDFTTIHLYPDQWVSNSNESAKDDFVSKWVQAHIQDSNDILGKPILFTEFGKSSKSSGYSVDKRDNYFEKIYNFIFNSASNGGPCAGGLFWQLMTQGMDDLHDGNEIICDENPSTANVITQQSKKMSNLG*






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