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Report for Sequence Feature Glyma.19g222800

Feature Type:gene_model
Chromosome:Gm19
Start:47512008
stop:47513094
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g222800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02335.1AT germin-like protein subfamily 2 member 2 precursor JGI N/AIEA
GO:0010497GO-bp plasmodesmata-mediated intercellular transport EnsemblGenomesN/AIEA
GO:2000280GO-bp regulation of root development EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00190PFAM Cupin JGI N/AIEA

Expression Patterns of Glyma.19g222800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g222800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g41070 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g222800
>Glyma.19g222800.1 sequence-type=CDS polypeptide=Glyma.19g222800.1.p locus=Glyma.19g222800 ID=Glyma.19g222800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATTCATACAATTTGTCGTCTCCATTGCCTACGCTTCTGATCCCGACGCACTTCAAGACCTTTGTGTCGCTTTTCCCTCCTCCAGTGTGAAGATGAATGGATTTGCATGCAAGGAGGAGGCAAATGTGACAGAAGCAGATTTCTTCTTTGCTGGGCTAGCGAATCCCGGAGTTATCAACAACGCAACGGGGTCAGTAGTCACTGCAGCCAATACTTCAAACCCACCTCACACACATCCTCGTGCCACCGAGATTCTGTTCGTGTTGGAAGGAGAACTTGACGTGGGTTTCATCACCACAGCCAACAAACTCATCTCCAAAACCGTAAAAGAAGGTGAAGTGTTTGTGTTCCCGAAAGCTTTGGTGCACTTTCAGAAGAACAATGGGGATAAGCCTGCTGCTGTTATTTCTGCGTTTGATAGCCAACTCCCTGGCACATTCTCTATAGTTGCGGTTTTGTTTAATTCTACCCCAAGTGTGCCTGATGATGTGCTCACACATGCCTTCCAGATTGATACTCAAGACGTTGACAAGATCAAGAACAGTCTTTCCTAG
Predicted protein sequences of Glyma.19g222800
>Glyma.19g222800.1.p sequence-type=predicted peptide transcript=Glyma.19g222800.1 locus=Glyma.19g222800 ID=Glyma.19g222800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
LFIQFVVSIAYASDPDALQDLCVAFPSSSVKMNGFACKEEANVTEADFFFAGLANPGVINNATGSVVTAANTSNPPHTHPRATEILFVLEGELDVGFITTANKLISKTVKEGEVFVFPKALVHFQKNNGDKPAAVISAFDSQLPGTFSIVAVLFNSTPSVPDDVLTHAFQIDTQDVDKIKNSLS*






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